Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03066

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03065 and MPMX19_03066 overlap by 11 nucleotidesMPMX19_03066 and MPMX19_03067 are separated by 192 nucleotides MPMX19_03065: MPMX19_03065 - Nucleoid occlusion protein, at 329,960 to 330,847 _03065 MPMX19_03066: MPMX19_03066 - hypothetical protein, at 330,837 to 331,850 _03066 MPMX19_03067: MPMX19_03067 - hypothetical protein, at 332,043 to 333,314 _03067 Position (kb) 330 331 332Strain fitness (log2 ratio) -1 0 1at 329.961 kb on + strandat 329.961 kb on + strandat 329.961 kb on + strandat 329.962 kb on - strandat 329.962 kb on - strandat 329.962 kb on - strandat 329.962 kb on - strandat 329.962 kb on - strandat 331.924 kb on - strandat 332.004 kb on - strandat 332.372 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.467 kb on - strand, within MPMX19_03067

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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329,961 + -0.8
329,961 + -1.0
329,961 + -0.4
329,962 - -1.2
329,962 - -1.3
329,962 - -0.3
329,962 - -0.8
329,962 - -0.9
331,924 - +0.6
332,004 - -1.5
332,372 + MPMX19_03067 0.26 +1.3
332,466 + MPMX19_03067 0.33 -0.4
332,466 + MPMX19_03067 0.33 +0.1
332,466 + MPMX19_03067 0.33 -1.1
332,467 - MPMX19_03067 0.33 +1.0

Or see this region's nucleotide sequence