Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03024

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03023 and MPMX19_03024 are separated by 351 nucleotidesMPMX19_03024 and MPMX19_03025 are separated by 47 nucleotides MPMX19_03023: MPMX19_03023 - Maltose O-acetyltransferase, at 288,003 to 288,563 _03023 MPMX19_03024: MPMX19_03024 - hypothetical protein, at 288,915 to 290,369 _03024 MPMX19_03025: MPMX19_03025 - hypothetical protein, at 290,417 to 291,538 _03025 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 287.945 kb on + strandat 287.946 kb on - strandat 287.946 kb on - strandat 287.946 kb on - strandat 288.057 kb on + strandat 288.057 kb on + strandat 288.057 kb on + strandat 288.057 kb on + strandat 288.057 kb on + strandat 288.058 kb on - strandat 288.058 kb on - strandat 288.058 kb on - strandat 288.058 kb on - strandat 288.058 kb on - strandat 288.058 kb on - strandat 288.120 kb on + strand, within MPMX19_03023at 288.120 kb on + strand, within MPMX19_03023at 288.120 kb on + strand, within MPMX19_03023at 288.121 kb on - strand, within MPMX19_03023at 288.121 kb on - strand, within MPMX19_03023at 288.228 kb on + strand, within MPMX19_03023at 288.228 kb on + strand, within MPMX19_03023at 288.228 kb on + strand, within MPMX19_03023at 288.228 kb on + strand, within MPMX19_03023at 288.229 kb on - strand, within MPMX19_03023at 288.229 kb on - strand, within MPMX19_03023at 288.234 kb on + strand, within MPMX19_03023at 288.234 kb on + strand, within MPMX19_03023at 288.235 kb on - strand, within MPMX19_03023at 288.697 kb on + strandat 288.698 kb on - strandat 288.733 kb on + strandat 288.826 kb on + strandat 289.363 kb on - strand, within MPMX19_03024at 289.383 kb on + strand, within MPMX19_03024at 289.383 kb on + strand, within MPMX19_03024at 289.383 kb on + strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.384 kb on - strand, within MPMX19_03024at 289.771 kb on + strand, within MPMX19_03024at 289.772 kb on - strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.151 kb on + strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.152 kb on - strand, within MPMX19_03024at 290.154 kb on + strand, within MPMX19_03024at 290.154 kb on + strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.155 kb on - strand, within MPMX19_03024at 290.367 kb on + strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.368 kb on - strandat 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.588 kb on + strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.589 kb on - strand, within MPMX19_03025at 290.744 kb on + strand, within MPMX19_03025at 290.744 kb on + strand, within MPMX19_03025at 290.744 kb on + strand, within MPMX19_03025at 290.745 kb on - strand, within MPMX19_03025at 290.745 kb on - strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.792 kb on + strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.793 kb on - strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 290.807 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.020 kb on + strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.021 kb on - strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.119 kb on + strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.120 kb on - strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.149 kb on + strand, within MPMX19_03025at 291.150 kb on - strand, within MPMX19_03025at 291.150 kb on - strand, within MPMX19_03025at 291.150 kb on - strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.215 kb on + strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025at 291.216 kb on - strand, within MPMX19_03025

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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287,945 + -0.4
287,946 - -0.4
287,946 - -0.8
287,946 - -2.2
288,057 + -1.9
288,057 + -0.5
288,057 + -0.1
288,057 + +2.0
288,057 + -0.1
288,058 - -0.2
288,058 - -0.2
288,058 - -0.4
288,058 - +0.6
288,058 - +1.0
288,058 - -1.9
288,120 + MPMX19_03023 0.21 -0.6
288,120 + MPMX19_03023 0.21 -1.0
288,120 + MPMX19_03023 0.21 -0.7
288,121 - MPMX19_03023 0.21 +0.1
288,121 - MPMX19_03023 0.21 -0.0
288,228 + MPMX19_03023 0.40 -0.1
288,228 + MPMX19_03023 0.40 -0.3
288,228 + MPMX19_03023 0.40 +1.0
288,228 + MPMX19_03023 0.40 -0.8
288,229 - MPMX19_03023 0.40 +1.4
288,229 - MPMX19_03023 0.40 +0.2
288,234 + MPMX19_03023 0.41 -0.5
288,234 + MPMX19_03023 0.41 -1.0
288,235 - MPMX19_03023 0.41 -1.0
288,697 + -1.3
288,698 - +1.0
288,733 + +0.5
288,826 + -1.6
289,363 - MPMX19_03024 0.31 -0.7
289,383 + MPMX19_03024 0.32 -1.2
289,383 + MPMX19_03024 0.32 +1.8
289,383 + MPMX19_03024 0.32 +0.9
289,384 - MPMX19_03024 0.32 -0.8
289,384 - MPMX19_03024 0.32 -0.1
289,384 - MPMX19_03024 0.32 -0.9
289,384 - MPMX19_03024 0.32 +0.9
289,384 - MPMX19_03024 0.32 -2.1
289,384 - MPMX19_03024 0.32 -1.2
289,384 - MPMX19_03024 0.32 -0.5
289,771 + MPMX19_03024 0.59 -1.0
289,772 - MPMX19_03024 0.59 -2.0
290,151 + MPMX19_03024 0.85 -0.5
290,151 + MPMX19_03024 0.85 -0.6
290,151 + MPMX19_03024 0.85 -0.2
290,151 + MPMX19_03024 0.85 +1.0
290,151 + MPMX19_03024 0.85 +0.2
290,151 + MPMX19_03024 0.85 -0.3
290,152 - MPMX19_03024 0.85 +0.3
290,152 - MPMX19_03024 0.85 -0.4
290,152 - MPMX19_03024 0.85 -0.9
290,152 - MPMX19_03024 0.85 -0.7
290,152 - MPMX19_03024 0.85 -0.0
290,152 - MPMX19_03024 0.85 -1.5
290,152 - MPMX19_03024 0.85 -0.4
290,152 - MPMX19_03024 0.85 -1.6
290,154 + MPMX19_03024 0.85 -1.0
290,154 + MPMX19_03024 0.85 -0.7
290,155 - MPMX19_03024 0.85 -0.4
290,155 - MPMX19_03024 0.85 -0.4
290,155 - MPMX19_03024 0.85 -1.0
290,155 - MPMX19_03024 0.85 +0.6
290,155 - MPMX19_03024 0.85 +0.2
290,367 + -0.4
290,368 - +1.0
290,368 - -1.1
290,368 - -0.0
290,368 - +1.1
290,368 - +0.2
290,588 + MPMX19_03025 0.15 -0.8
290,588 + MPMX19_03025 0.15 -0.6
290,588 + MPMX19_03025 0.15 -0.5
290,588 + MPMX19_03025 0.15 -1.2
290,588 + MPMX19_03025 0.15 +0.9
290,588 + MPMX19_03025 0.15 +0.1
290,588 + MPMX19_03025 0.15 -0.7
290,588 + MPMX19_03025 0.15 -0.8
290,588 + MPMX19_03025 0.15 -0.7
290,588 + MPMX19_03025 0.15 -0.7
290,588 + MPMX19_03025 0.15 -0.2
290,588 + MPMX19_03025 0.15 +1.0
290,588 + MPMX19_03025 0.15 +0.4
290,588 + MPMX19_03025 0.15 -0.9
290,588 + MPMX19_03025 0.15 +1.1
290,588 + MPMX19_03025 0.15 -1.8
290,588 + MPMX19_03025 0.15 -2.2
290,588 + MPMX19_03025 0.15 +0.8
290,588 + MPMX19_03025 0.15 -0.1
290,588 + MPMX19_03025 0.15 -0.8
290,588 + MPMX19_03025 0.15 -0.3
290,588 + MPMX19_03025 0.15 -1.0
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 -0.6
290,589 - MPMX19_03025 0.15 -0.7
290,589 - MPMX19_03025 0.15 +0.9
290,589 - MPMX19_03025 0.15 -0.3
290,589 - MPMX19_03025 0.15 -0.4
290,589 - MPMX19_03025 0.15 -1.4
290,589 - MPMX19_03025 0.15 +0.2
290,589 - MPMX19_03025 0.15 +1.1
290,589 - MPMX19_03025 0.15 -2.1
290,589 - MPMX19_03025 0.15 +1.2
290,589 - MPMX19_03025 0.15 -0.8
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 -0.2
290,589 - MPMX19_03025 0.15 -2.0
290,589 - MPMX19_03025 0.15 +0.8
290,589 - MPMX19_03025 0.15 -1.1
290,589 - MPMX19_03025 0.15 -1.2
290,589 - MPMX19_03025 0.15 -0.3
290,589 - MPMX19_03025 0.15 -0.7
290,589 - MPMX19_03025 0.15 -0.9
290,589 - MPMX19_03025 0.15 +0.4
290,589 - MPMX19_03025 0.15 +0.7
290,589 - MPMX19_03025 0.15 -0.8
290,589 - MPMX19_03025 0.15 -0.8
290,589 - MPMX19_03025 0.15 -1.3
290,589 - MPMX19_03025 0.15 +0.1
290,589 - MPMX19_03025 0.15 +0.4
290,589 - MPMX19_03025 0.15 +0.6
290,589 - MPMX19_03025 0.15 -1.2
290,589 - MPMX19_03025 0.15 -0.3
290,589 - MPMX19_03025 0.15 -0.6
290,589 - MPMX19_03025 0.15 +0.2
290,589 - MPMX19_03025 0.15 -0.4
290,589 - MPMX19_03025 0.15 -2.0
290,744 + MPMX19_03025 0.29 +0.3
290,744 + MPMX19_03025 0.29 +0.4
290,744 + MPMX19_03025 0.29 -0.3
290,745 - MPMX19_03025 0.29 +0.6
290,745 - MPMX19_03025 0.29 +1.3
290,792 + MPMX19_03025 0.33 -0.4
290,792 + MPMX19_03025 0.33 -1.0
290,792 + MPMX19_03025 0.33 -1.0
290,792 + MPMX19_03025 0.33 -0.7
290,792 + MPMX19_03025 0.33 +0.1
290,793 - MPMX19_03025 0.34 -0.0
290,793 - MPMX19_03025 0.34 +0.2
290,793 - MPMX19_03025 0.34 -0.1
290,793 - MPMX19_03025 0.34 -0.1
290,793 - MPMX19_03025 0.34 +0.2
290,793 - MPMX19_03025 0.34 -1.1
290,807 + MPMX19_03025 0.35 -1.2
290,807 + MPMX19_03025 0.35 -0.8
290,807 + MPMX19_03025 0.35 -0.3
290,807 + MPMX19_03025 0.35 -0.0
290,807 + MPMX19_03025 0.35 -0.8
290,807 + MPMX19_03025 0.35 -1.3
291,020 + MPMX19_03025 0.54 +0.5
291,020 + MPMX19_03025 0.54 -0.8
291,020 + MPMX19_03025 0.54 +0.6
291,020 + MPMX19_03025 0.54 -1.0
291,020 + MPMX19_03025 0.54 -1.3
291,020 + MPMX19_03025 0.54 -0.8
291,020 + MPMX19_03025 0.54 -1.0
291,020 + MPMX19_03025 0.54 -0.8
291,021 - MPMX19_03025 0.54 -1.1
291,021 - MPMX19_03025 0.54 +1.4
291,021 - MPMX19_03025 0.54 -0.0
291,021 - MPMX19_03025 0.54 +0.1
291,021 - MPMX19_03025 0.54 -1.2
291,021 - MPMX19_03025 0.54 -1.0
291,021 - MPMX19_03025 0.54 -0.6
291,021 - MPMX19_03025 0.54 +0.2
291,119 + MPMX19_03025 0.63 -2.2
291,119 + MPMX19_03025 0.63 -0.6
291,119 + MPMX19_03025 0.63 -0.8
291,119 + MPMX19_03025 0.63 -0.1
291,119 + MPMX19_03025 0.63 -0.4
291,119 + MPMX19_03025 0.63 -0.0
291,119 + MPMX19_03025 0.63 +0.8
291,119 + MPMX19_03025 0.63 -0.6
291,119 + MPMX19_03025 0.63 -0.3
291,119 + MPMX19_03025 0.63 -1.2
291,119 + MPMX19_03025 0.63 -3.5
291,120 - MPMX19_03025 0.63 -0.2
291,120 - MPMX19_03025 0.63 +1.1
291,120 - MPMX19_03025 0.63 -0.6
291,120 - MPMX19_03025 0.63 -0.8
291,120 - MPMX19_03025 0.63 -0.8
291,120 - MPMX19_03025 0.63 -0.4
291,120 - MPMX19_03025 0.63 -0.2
291,120 - MPMX19_03025 0.63 +0.6
291,120 - MPMX19_03025 0.63 +1.0
291,120 - MPMX19_03025 0.63 -2.6
291,120 - MPMX19_03025 0.63 +0.6
291,120 - MPMX19_03025 0.63 -0.4
291,120 - MPMX19_03025 0.63 +0.5
291,149 + MPMX19_03025 0.65 -0.0
291,149 + MPMX19_03025 0.65 -0.0
291,149 + MPMX19_03025 0.65 -1.0
291,149 + MPMX19_03025 0.65 +1.6
291,149 + MPMX19_03025 0.65 -0.8
291,149 + MPMX19_03025 0.65 -1.4
291,150 - MPMX19_03025 0.65 -1.8
291,150 - MPMX19_03025 0.65 +1.7
291,150 - MPMX19_03025 0.65 -1.9
291,215 + MPMX19_03025 0.71 -2.0
291,215 + MPMX19_03025 0.71 -0.4
291,215 + MPMX19_03025 0.71 +0.1
291,215 + MPMX19_03025 0.71 +0.8
291,215 + MPMX19_03025 0.71 -0.2
291,215 + MPMX19_03025 0.71 +0.5
291,216 - MPMX19_03025 0.71 -1.8
291,216 - MPMX19_03025 0.71 -1.0
291,216 - MPMX19_03025 0.71 -1.0
291,216 - MPMX19_03025 0.71 -0.2
291,216 - MPMX19_03025 0.71 +0.8

Or see this region's nucleotide sequence