Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02993

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02992 and MPMX19_02993 overlap by 4 nucleotidesMPMX19_02993 and MPMX19_02994 are separated by 97 nucleotides MPMX19_02992: MPMX19_02992 - hypothetical protein, at 253,501 to 254,865 _02992 MPMX19_02993: MPMX19_02993 - D-xylose dehydrogenase, at 254,862 to 256,013 _02993 MPMX19_02994: MPMX19_02994 - hypothetical protein, at 256,111 to 257,271 _02994 Position (kb) 254 255 256 257Strain fitness (log2 ratio) -2 -1 0 1 2at 254.224 kb on + strand, within MPMX19_02992at 254.224 kb on + strand, within MPMX19_02992at 254.225 kb on - strand, within MPMX19_02992at 254.308 kb on + strand, within MPMX19_02992at 254.309 kb on - strand, within MPMX19_02992at 254.309 kb on - strand, within MPMX19_02992at 254.408 kb on - strand, within MPMX19_02992at 254.440 kb on + strand, within MPMX19_02992at 254.441 kb on - strand, within MPMX19_02992at 254.476 kb on + strand, within MPMX19_02992at 254.476 kb on + strand, within MPMX19_02992at 254.476 kb on + strand, within MPMX19_02992at 254.476 kb on + strand, within MPMX19_02992at 254.476 kb on + strand, within MPMX19_02992at 254.476 kb on + strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.477 kb on - strand, within MPMX19_02992at 254.636 kb on - strand, within MPMX19_02992at 254.698 kb on + strand, within MPMX19_02992at 254.698 kb on + strand, within MPMX19_02992at 254.699 kb on - strand, within MPMX19_02992at 254.699 kb on - strand, within MPMX19_02992at 254.699 kb on - strand, within MPMX19_02992at 254.699 kb on - strand, within MPMX19_02992at 255.189 kb on + strand, within MPMX19_02993at 255.190 kb on - strand, within MPMX19_02993at 255.376 kb on - strand, within MPMX19_02993at 255.426 kb on + strand, within MPMX19_02993at 255.427 kb on - strand, within MPMX19_02993at 255.480 kb on + strand, within MPMX19_02993at 255.480 kb on + strand, within MPMX19_02993at 255.481 kb on - strand, within MPMX19_02993at 255.573 kb on + strand, within MPMX19_02993at 255.573 kb on + strand, within MPMX19_02993at 255.574 kb on - strand, within MPMX19_02993at 255.600 kb on + strand, within MPMX19_02993at 255.601 kb on - strand, within MPMX19_02993at 255.601 kb on - strand, within MPMX19_02993at 255.807 kb on + strand, within MPMX19_02993at 255.807 kb on + strand, within MPMX19_02993at 255.807 kb on + strand, within MPMX19_02993at 255.807 kb on + strand, within MPMX19_02993at 255.807 kb on + strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.808 kb on - strand, within MPMX19_02993at 255.906 kb on + strandat 255.907 kb on - strandat 255.907 kb on - strandat 255.907 kb on - strandat 255.907 kb on - strandat 256.103 kb on + strandat 256.103 kb on + strandat 256.103 kb on + strandat 256.104 kb on - strandat 256.156 kb on + strandat 256.157 kb on - strandat 256.157 kb on - strandat 256.519 kb on + strand, within MPMX19_02994at 256.519 kb on + strand, within MPMX19_02994at 256.520 kb on - strand, within MPMX19_02994at 256.520 kb on - strand, within MPMX19_02994at 256.520 kb on - strand, within MPMX19_02994at 256.520 kb on - strand, within MPMX19_02994at 256.520 kb on - strand, within MPMX19_02994at 256.520 kb on - strand, within MPMX19_02994at 256.615 kb on + strand, within MPMX19_02994at 256.615 kb on + strand, within MPMX19_02994at 256.615 kb on + strand, within MPMX19_02994at 256.615 kb on + strand, within MPMX19_02994at 256.615 kb on + strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.616 kb on - strand, within MPMX19_02994at 256.628 kb on - strand, within MPMX19_02994at 256.708 kb on + strand, within MPMX19_02994at 256.709 kb on - strand, within MPMX19_02994at 256.861 kb on + strand, within MPMX19_02994at 256.861 kb on + strand, within MPMX19_02994at 256.861 kb on + strand, within MPMX19_02994at 256.861 kb on + strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.862 kb on - strand, within MPMX19_02994at 256.882 kb on + strand, within MPMX19_02994at 256.883 kb on - strand, within MPMX19_02994at 256.883 kb on - strand, within MPMX19_02994

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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254,224 + MPMX19_02992 0.53 +0.7
254,224 + MPMX19_02992 0.53 -1.4
254,225 - MPMX19_02992 0.53 -0.5
254,308 + MPMX19_02992 0.59 -0.1
254,309 - MPMX19_02992 0.59 -0.1
254,309 - MPMX19_02992 0.59 +1.8
254,408 - MPMX19_02992 0.66 -0.0
254,440 + MPMX19_02992 0.69 -2.4
254,441 - MPMX19_02992 0.69 -0.9
254,476 + MPMX19_02992 0.71 -1.4
254,476 + MPMX19_02992 0.71 -1.0
254,476 + MPMX19_02992 0.71 -2.0
254,476 + MPMX19_02992 0.71 -1.0
254,476 + MPMX19_02992 0.71 -1.5
254,476 + MPMX19_02992 0.71 -0.8
254,477 - MPMX19_02992 0.72 -0.0
254,477 - MPMX19_02992 0.72 -0.8
254,477 - MPMX19_02992 0.72 -1.0
254,477 - MPMX19_02992 0.72 -1.0
254,477 - MPMX19_02992 0.72 -0.4
254,477 - MPMX19_02992 0.72 -2.1
254,477 - MPMX19_02992 0.72 -0.0
254,636 - MPMX19_02992 0.83 +0.6
254,698 + MPMX19_02992 0.88 -0.2
254,698 + MPMX19_02992 0.88 -0.4
254,699 - MPMX19_02992 0.88 -1.1
254,699 - MPMX19_02992 0.88 -0.0
254,699 - MPMX19_02992 0.88 -0.8
254,699 - MPMX19_02992 0.88 -0.7
255,189 + MPMX19_02993 0.28 -0.9
255,190 - MPMX19_02993 0.28 -1.8
255,376 - MPMX19_02993 0.45 -0.6
255,426 + MPMX19_02993 0.49 -0.1
255,427 - MPMX19_02993 0.49 -1.2
255,480 + MPMX19_02993 0.54 +1.2
255,480 + MPMX19_02993 0.54 -0.8
255,481 - MPMX19_02993 0.54 -2.0
255,573 + MPMX19_02993 0.62 -2.1
255,573 + MPMX19_02993 0.62 -0.9
255,574 - MPMX19_02993 0.62 -1.2
255,600 + MPMX19_02993 0.64 -0.2
255,601 - MPMX19_02993 0.64 -1.4
255,601 - MPMX19_02993 0.64 -1.0
255,807 + MPMX19_02993 0.82 -0.9
255,807 + MPMX19_02993 0.82 -1.6
255,807 + MPMX19_02993 0.82 +0.1
255,807 + MPMX19_02993 0.82 +1.2
255,807 + MPMX19_02993 0.82 -0.8
255,808 - MPMX19_02993 0.82 -0.8
255,808 - MPMX19_02993 0.82 +0.6
255,808 - MPMX19_02993 0.82 -0.6
255,808 - MPMX19_02993 0.82 -0.4
255,808 - MPMX19_02993 0.82 -2.7
255,808 - MPMX19_02993 0.82 -1.6
255,808 - MPMX19_02993 0.82 +0.8
255,906 + +0.3
255,907 - -0.4
255,907 - +0.3
255,907 - -1.4
255,907 - -0.4
256,103 + -2.1
256,103 + -0.6
256,103 + +0.8
256,104 - -0.6
256,156 + -0.6
256,157 - -1.6
256,157 - -0.0
256,519 + MPMX19_02994 0.35 -0.5
256,519 + MPMX19_02994 0.35 -0.8
256,520 - MPMX19_02994 0.35 -0.0
256,520 - MPMX19_02994 0.35 -0.6
256,520 - MPMX19_02994 0.35 -1.9
256,520 - MPMX19_02994 0.35 +0.6
256,520 - MPMX19_02994 0.35 -0.8
256,520 - MPMX19_02994 0.35 -1.1
256,615 + MPMX19_02994 0.43 +1.0
256,615 + MPMX19_02994 0.43 -1.2
256,615 + MPMX19_02994 0.43 -2.0
256,615 + MPMX19_02994 0.43 -1.4
256,615 + MPMX19_02994 0.43 -0.8
256,616 - MPMX19_02994 0.43 -0.5
256,616 - MPMX19_02994 0.43 -1.2
256,616 - MPMX19_02994 0.43 +0.2
256,616 - MPMX19_02994 0.43 -0.2
256,616 - MPMX19_02994 0.43 -0.3
256,616 - MPMX19_02994 0.43 +0.6
256,616 - MPMX19_02994 0.43 -1.3
256,616 - MPMX19_02994 0.43 -0.6
256,628 - MPMX19_02994 0.45 +0.8
256,708 + MPMX19_02994 0.51 -0.5
256,709 - MPMX19_02994 0.52 +0.8
256,861 + MPMX19_02994 0.65 -0.3
256,861 + MPMX19_02994 0.65 +0.3
256,861 + MPMX19_02994 0.65 -1.6
256,861 + MPMX19_02994 0.65 +0.6
256,862 - MPMX19_02994 0.65 -0.8
256,862 - MPMX19_02994 0.65 -0.2
256,862 - MPMX19_02994 0.65 -0.6
256,862 - MPMX19_02994 0.65 +0.1
256,862 - MPMX19_02994 0.65 +0.1
256,862 - MPMX19_02994 0.65 +0.1
256,862 - MPMX19_02994 0.65 -1.0
256,862 - MPMX19_02994 0.65 -1.3
256,862 - MPMX19_02994 0.65 -0.3
256,882 + MPMX19_02994 0.66 -0.8
256,883 - MPMX19_02994 0.66 +0.2
256,883 - MPMX19_02994 0.66 -0.6

Or see this region's nucleotide sequence