Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02821 and MPMX19_02822 are separated by 264 nucleotides MPMX19_02822 and MPMX19_02823 are separated by 323 nucleotides
MPMX19_02821: MPMX19_02821 - Sensor histidine kinase RcsC, at 58,400 to 61,618
_02821
MPMX19_02822: MPMX19_02822 - HTH-type transcriptional regulator ArgP, at 61,883 to 62,890
_02822
MPMX19_02823: MPMX19_02823 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 63,214 to 64,536
_02823
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 61.344 kb on + strand at 61.344 kb on + strand at 61.344 kb on + strand at 61.344 kb on + strand at 61.345 kb on - strand at 61.345 kb on - strand at 61.345 kb on - strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.362 kb on + strand at 61.363 kb on - strand at 61.432 kb on - strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.817 kb on + strand at 61.817 kb on + strand at 61.817 kb on + strand at 61.818 kb on - strand at 61.818 kb on - strand at 61.869 kb on + strand at 61.869 kb on + strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.971 kb on + strand at 61.972 kb on - strand at 61.972 kb on - strand at 62.055 kb on + strand, within MPMX19_02822 at 62.056 kb on - strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.950 kb on - strand at 62.950 kb on - strand at 62.950 kb on - strand at 63.016 kb on + strand at 63.044 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.092 kb on - strand at 63.102 kb on + strand at 63.103 kb on - strand at 63.210 kb on + strand at 63.210 kb on + strand at 63.211 kb on - strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.226 kb on - strand at 63.490 kb on + strand, within MPMX19_02823 at 63.490 kb on + strand, within MPMX19_02823 at 63.491 kb on - strand, within MPMX19_02823 at 63.567 kb on + strand, within MPMX19_02823 at 63.568 kb on - strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.689 kb on - strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 61,344 + -0.5 61,344 + +0.4 61,344 + -0.1 61,344 + -0.6 61,345 - -1.4 61,345 - +0.2 61,345 - -0.3 61,359 + -0.9 61,359 + -0.5 61,359 + -1.0 61,359 + +0.0 61,359 + +0.2 61,359 + -0.1 61,359 + +0.1 61,359 + +1.1 61,360 - +0.6 61,360 - +0.9 61,360 - +0.6 61,360 - -0.2 61,360 - -1.2 61,362 + -0.3 61,363 - +0.4 61,432 - -0.4 61,548 + +0.0 61,548 + -1.8 61,548 + -1.6 61,548 + +0.4 61,548 + -1.0 61,548 + +0.3 61,549 - +1.3 61,549 - -0.5 61,549 - +0.2 61,549 - +0.5 61,549 - -0.5 61,817 + -0.7 61,817 + +0.4 61,817 + +1.0 61,818 - +0.4 61,818 - +0.7 61,869 + -0.7 61,869 + -0.4 61,870 - -0.7 61,870 - +0.6 61,870 - -1.4 61,870 - -2.1 61,870 - +0.0 61,870 - -0.7 61,971 + -0.7 61,972 - -2.2 61,972 - +1.6 62,055 + MPMX19_02822 0.17 +0.3 62,056 - MPMX19_02822 0.17 -2.6 62,337 + MPMX19_02822 0.45 +0.1 62,337 + MPMX19_02822 0.45 -0.5 62,337 + MPMX19_02822 0.45 -1.6 62,338 - MPMX19_02822 0.45 -0.7 62,338 - MPMX19_02822 0.45 -0.6 62,338 - MPMX19_02822 0.45 -0.1 62,346 + MPMX19_02822 0.46 -1.3 62,346 + MPMX19_02822 0.46 -1.1 62,346 + MPMX19_02822 0.46 -0.4 62,346 + MPMX19_02822 0.46 -0.5 62,346 + MPMX19_02822 0.46 +0.2 62,346 + MPMX19_02822 0.46 +1.0 62,346 + MPMX19_02822 0.46 +0.9 62,346 + MPMX19_02822 0.46 +0.1 62,346 + MPMX19_02822 0.46 +0.3 62,346 + MPMX19_02822 0.46 -0.6 62,346 + MPMX19_02822 0.46 -0.4 62,346 + MPMX19_02822 0.46 -0.5 62,347 - MPMX19_02822 0.46 +0.0 62,347 - MPMX19_02822 0.46 -0.1 62,347 - MPMX19_02822 0.46 -1.0 62,347 - MPMX19_02822 0.46 +1.2 62,347 - MPMX19_02822 0.46 -1.6 62,347 - MPMX19_02822 0.46 +0.4 62,347 - MPMX19_02822 0.46 -0.7 62,490 + MPMX19_02822 0.60 +0.3 62,490 + MPMX19_02822 0.60 -1.0 62,491 - MPMX19_02822 0.60 -0.9 62,491 - MPMX19_02822 0.60 -1.0 62,491 - MPMX19_02822 0.60 -1.7 62,646 + MPMX19_02822 0.76 -0.5 62,646 + MPMX19_02822 0.76 -1.6 62,646 + MPMX19_02822 0.76 +0.8 62,647 - MPMX19_02822 0.76 +0.7 62,647 - MPMX19_02822 0.76 +0.3 62,647 - MPMX19_02822 0.76 +0.2 62,647 - MPMX19_02822 0.76 -0.1 62,950 - +0.3 62,950 - -0.8 62,950 - +0.2 63,016 + +0.0 63,044 + +0.4 63,091 + -0.4 63,091 + -1.4 63,091 + -0.7 63,092 - +0.4 63,102 + -0.3 63,103 - -0.9 63,210 + +0.1 63,210 + -1.5 63,211 - -0.5 63,225 + -0.9 63,225 + -1.9 63,225 + -0.6 63,226 - +0.2 63,490 + MPMX19_02823 0.21 -0.7 63,490 + MPMX19_02823 0.21 +0.1 63,491 - MPMX19_02823 0.21 -0.5 63,567 + MPMX19_02823 0.27 -1.6 63,568 - MPMX19_02823 0.27 -0.1 63,646 + MPMX19_02823 0.33 -1.3 63,646 + MPMX19_02823 0.33 +0.4 63,646 + MPMX19_02823 0.33 -1.1 63,646 + MPMX19_02823 0.33 -1.0 63,646 + MPMX19_02823 0.33 +1.2 63,646 + MPMX19_02823 0.33 -0.6 63,647 - MPMX19_02823 0.33 -0.6 63,647 - MPMX19_02823 0.33 -1.2 63,647 - MPMX19_02823 0.33 -1.0 63,647 - MPMX19_02823 0.33 -1.3 63,647 - MPMX19_02823 0.33 -1.0 63,647 - MPMX19_02823 0.33 -1.2 63,688 + MPMX19_02823 0.36 +0.2 63,688 + MPMX19_02823 0.36 -0.2 63,689 - MPMX19_02823 0.36 -0.2 63,745 + MPMX19_02823 0.40 -0.2 63,745 + MPMX19_02823 0.40 +0.0 63,745 + MPMX19_02823 0.40 -1.7 63,745 + MPMX19_02823 0.40 -0.7 63,745 + MPMX19_02823 0.40 -0.7 63,746 - MPMX19_02823 0.40 +0.0 63,746 - MPMX19_02823 0.40 -0.9 63,746 - MPMX19_02823 0.40 -0.1 63,746 - MPMX19_02823 0.40 +0.3
Or see this region's nucleotide sequence