Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02522

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02520 and MPMX19_02521 are separated by 74 nucleotidesMPMX19_02521 and MPMX19_02522 are separated by 21 nucleotidesMPMX19_02522 and MPMX19_02523 are separated by 252 nucleotidesMPMX19_02523 and MPMX19_02524 overlap by 11 nucleotides MPMX19_02520: MPMX19_02520 - Transcription termination/antitermination protein NusA, at 2,637,976 to 2,639,547 _02520 MPMX19_02521: MPMX19_02521 - hypothetical protein, at 2,639,622 to 2,640,422 _02521 MPMX19_02522: MPMX19_02522 - Translation initiation factor IF-2, at 2,640,444 to 2,643,329 _02522 MPMX19_02523: MPMX19_02523 - Ribosome-binding factor A, at 2,643,582 to 2,644,196 _02523 MPMX19_02524: MPMX19_02524 - tRNA pseudouridine synthase B, at 2,644,186 to 2,645,127 _02524 Position (kb) 2640 2641 2642 2643 2644Strain fitness (log2 ratio) -2 -1 0 1 2at 2639.590 kb on + strandat 2639.590 kb on + strandat 2639.590 kb on + strandat 2639.590 kb on + strandat 2640.420 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.428 kb on + strandat 2643.430 kb on + strandat 2643.430 kb on + strandat 2643.430 kb on + strandat 2643.430 kb on + strandat 2643.430 kb on + strandat 2643.578 kb on + strandat 2644.194 kb on + strandat 2644.194 kb on + strandat 2644.194 kb on + strandat 2644.194 kb on + strandat 2644.195 kb on - strandat 2644.195 kb on - strandat 2644.195 kb on - strandat 2644.195 kb on - strandat 2644.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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2,639,590 + -1.0
2,639,590 + +0.5
2,639,590 + +1.0
2,639,590 + -0.4
2,640,420 + -1.3
2,643,428 + +0.0
2,643,428 + +0.6
2,643,428 + +0.0
2,643,428 + -0.0
2,643,428 + +0.7
2,643,428 + +0.0
2,643,428 + +0.1
2,643,428 + +0.3
2,643,428 + -1.7
2,643,428 + -2.3
2,643,428 + -1.0
2,643,428 + -0.9
2,643,428 + -0.9
2,643,428 + +1.1
2,643,428 + -1.1
2,643,428 + -0.2
2,643,428 + +1.0
2,643,428 + -1.6
2,643,428 + -1.3
2,643,428 + -0.4
2,643,428 + +0.6
2,643,428 + -0.3
2,643,428 + +0.1
2,643,428 + -0.3
2,643,428 + -1.2
2,643,430 + -1.7
2,643,430 + +0.6
2,643,430 + -1.1
2,643,430 + +0.7
2,643,430 + +1.1
2,643,578 + -1.3
2,644,194 + -1.0
2,644,194 + -0.2
2,644,194 + -0.9
2,644,194 + -0.2
2,644,195 - -0.1
2,644,195 - -0.5
2,644,195 - -1.4
2,644,195 - +2.0
2,644,195 - -0.0

Or see this region's nucleotide sequence