Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00742 and MPMX19_00743 are separated by 151 nucleotides MPMX19_00743 and MPMX19_00744 are separated by 103 nucleotides MPMX19_00744 and MPMX19_00745 are separated by 94 nucleotides MPMX19_00745 and MPMX19_00746 are separated by 219 nucleotides MPMX19_00746 and MPMX19_00747 are separated by 260 nucleotides
MPMX19_00742: MPMX19_00742 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 762,019 to 762,990
_00742
MPMX19_00743: MPMX19_00743 - Integration host factor subunit alpha, at 763,142 to 763,474
_00743
MPMX19_00744: MPMX19_00744 - hypothetical protein, at 763,578 to 764,054
_00744
MPMX19_00745: MPMX19_00745 - tRNA-Pro, at 764,149 to 764,225
_00745
MPMX19_00746: MPMX19_00746 - hypothetical protein, at 764,445 to 764,675
_00746
MPMX19_00747: MPMX19_00747 - Organic hydroperoxide resistance protein OhrB, at 764,936 to 765,355
_00747
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 763.004 kb on + strand at 763.005 kb on - strand at 763.005 kb on - strand at 763.005 kb on - strand at 763.058 kb on + strand at 763.058 kb on + strand at 763.058 kb on + strand at 763.058 kb on + strand at 763.059 kb on - strand at 763.059 kb on - strand at 763.059 kb on - strand at 763.059 kb on - strand at 763.596 kb on + strand at 763.597 kb on - strand at 763.597 kb on - strand at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.711 kb on - strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.773 kb on + strand, within MPMX19_00744 at 763.773 kb on + strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.311 kb on - strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.815 kb on + strand at 764.816 kb on - strand at 764.816 kb on - strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 763,004 + +0.2 763,005 - +0.8 763,005 - -0.6 763,005 - +0.2 763,058 + +0.4 763,058 + +0.1 763,058 + -1.2 763,058 + -0.1 763,059 - -0.8 763,059 - -2.7 763,059 - -0.1 763,059 - +0.1 763,596 + +0.2 763,597 - -0.8 763,597 - +1.0 763,645 + MPMX19_00744 0.14 +0.0 763,645 + MPMX19_00744 0.14 -0.8 763,645 + MPMX19_00744 0.14 +0.5 763,645 + MPMX19_00744 0.14 -0.3 763,645 + MPMX19_00744 0.14 -0.8 763,645 + MPMX19_00744 0.14 -0.5 763,645 + MPMX19_00744 0.14 -0.4 763,645 + MPMX19_00744 0.14 -1.0 763,645 + MPMX19_00744 0.14 +1.2 763,645 + MPMX19_00744 0.14 -0.5 763,645 + MPMX19_00744 0.14 -2.0 763,645 + MPMX19_00744 0.14 -0.8 763,645 + MPMX19_00744 0.14 -0.8 763,645 + MPMX19_00744 0.14 -1.1 763,645 + MPMX19_00744 0.14 -1.2 763,645 + MPMX19_00744 0.14 -0.8 763,645 + MPMX19_00744 0.14 +0.1 763,645 - MPMX19_00744 0.14 -0.2 763,646 - MPMX19_00744 0.14 -3.1 763,646 - MPMX19_00744 0.14 +1.0 763,646 - MPMX19_00744 0.14 -0.5 763,646 - MPMX19_00744 0.14 -0.1 763,646 - MPMX19_00744 0.14 -0.1 763,646 - MPMX19_00744 0.14 -0.0 763,646 - MPMX19_00744 0.14 -0.8 763,646 - MPMX19_00744 0.14 -0.3 763,646 - MPMX19_00744 0.14 -0.4 763,646 - MPMX19_00744 0.14 +0.4 763,646 - MPMX19_00744 0.14 -0.3 763,710 + MPMX19_00744 0.28 -0.1 763,710 + MPMX19_00744 0.28 +0.7 763,710 + MPMX19_00744 0.28 +0.7 763,710 + MPMX19_00744 0.28 -0.7 763,711 - MPMX19_00744 0.28 -1.5 763,761 + MPMX19_00744 0.38 -0.7 763,761 + MPMX19_00744 0.38 -0.7 763,761 + MPMX19_00744 0.38 -0.3 763,761 + MPMX19_00744 0.38 -0.4 763,761 + MPMX19_00744 0.38 -1.1 763,761 + MPMX19_00744 0.38 -1.4 763,761 + MPMX19_00744 0.38 -0.7 763,761 + MPMX19_00744 0.38 -0.1 763,762 - MPMX19_00744 0.39 -1.3 763,762 - MPMX19_00744 0.39 -0.4 763,762 - MPMX19_00744 0.39 -1.3 763,762 - MPMX19_00744 0.39 -0.2 763,762 - MPMX19_00744 0.39 -1.1 763,762 - MPMX19_00744 0.39 -0.0 763,773 + MPMX19_00744 0.41 -1.5 763,773 + MPMX19_00744 0.41 -1.0 763,774 - MPMX19_00744 0.41 +0.1 763,774 - MPMX19_00744 0.41 -1.1 763,774 - MPMX19_00744 0.41 -1.2 763,774 - MPMX19_00744 0.41 -0.7 764,310 + +0.7 764,310 + -1.5 764,310 + -0.4 764,310 + -0.1 764,310 + -1.3 764,311 - -2.0 764,321 + -1.0 764,321 + +0.5 764,321 + -1.0 764,321 + -1.0 764,321 + -1.8 764,321 + -0.3 764,321 + -1.0 764,321 + +0.4 764,321 + +0.3 764,321 + -0.6 764,321 + -2.1 764,321 + -0.8 764,321 + -0.7 764,321 + +1.1 764,321 + -1.3 764,321 + -2.0 764,321 + -1.2 764,321 + +1.0 764,321 + -1.7 764,322 - +0.9 764,322 - -0.7 764,322 - -0.8 764,322 - +0.5 764,322 - -1.6 764,322 - -1.4 764,322 - -1.5 764,322 - -0.3 764,322 - -0.6 764,517 + MPMX19_00746 0.31 -0.3 764,517 + MPMX19_00746 0.31 +0.3 764,517 + MPMX19_00746 0.31 -0.7 764,517 + MPMX19_00746 0.31 -0.7 764,517 + MPMX19_00746 0.31 +0.4 764,518 - MPMX19_00746 0.32 +0.4 764,518 - MPMX19_00746 0.32 -0.1 764,518 - MPMX19_00746 0.32 -0.5 764,518 - MPMX19_00746 0.32 -1.0 764,518 - MPMX19_00746 0.32 -0.6 764,518 - MPMX19_00746 0.32 -0.6 764,758 + -0.7 764,758 + +0.3 764,758 + -0.6 764,758 + -0.2 764,758 + -0.5 764,758 + -1.3 764,758 + +0.2 764,758 + -1.1 764,758 + -0.2 764,758 + -1.4 764,758 + +0.0 764,758 + -1.0 764,758 + +0.1 764,758 + -0.8 764,758 + -0.3 764,758 + +0.3 764,758 + -0.5 764,758 + +0.3 764,758 + +0.2 764,758 + -0.2 764,759 - -1.1 764,759 - -0.2 764,759 - +0.5 764,759 - -0.4 764,759 - -1.3 764,759 - +0.8 764,759 - -1.0 764,759 - -0.5 764,759 - +0.5 764,759 - +0.3 764,759 - -1.1 764,759 - -1.0 764,759 - -0.9 764,759 - -0.1 764,759 - +1.8 764,759 - +0.1 764,759 - +0.2 764,759 - +1.9 764,759 - -0.3 764,759 - -0.8 764,760 + +0.3 764,760 + -1.0 764,760 + -1.1 764,760 + -1.1 764,760 + -1.3 764,760 + -2.3 764,760 + -0.1 764,760 + -1.4 764,760 + -1.3 764,760 + -0.4 764,760 + +0.5 764,760 + +0.2 764,761 - -0.1 764,761 - -0.7 764,761 - +0.1 764,761 - -0.8 764,761 - -1.1 764,761 - +0.3 764,761 - +0.1 764,761 - +0.5 764,761 - -1.9 764,761 - -1.5 764,761 - -0.5 764,761 - +0.0 764,761 - +2.2 764,761 - +0.5 764,761 - -2.1 764,761 - +0.5 764,761 - -1.2 764,761 - -1.8 764,815 + -1.7 764,816 - -0.1 764,816 - -0.5 764,948 + -0.5 764,948 + +0.5 764,948 + -0.7 764,949 - -0.4 764,949 - -1.4 764,949 - -1.7 764,949 - +0.4 764,949 - -0.0 764,949 - +0.6
Or see this region's nucleotide sequence