Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00002

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
1,653	-				+1.2
1,653	-				+1.6
1,708	+				+0.5
1,708	+				-0.2
1,709	-				-0.2
1,709	-				-1.5
1,775	+				+0.4
1,776	-				-0.6
1,821	-		MPMX19_00002	0.13	+1.2
1,821	-		MPMX19_00002	0.13	+0.1
2,105	+		MPMX19_00002	0.44	-1.4
2,105	+		MPMX19_00002	0.44	+0.4
2,106	-		MPMX19_00002	0.44	-0.4
2,106	-		MPMX19_00002	0.44	-1.1
2,106	-		MPMX19_00002	0.44	-0.4
2,106	-		MPMX19_00002	0.44	+0.2
2,106	-		MPMX19_00002	0.44	-0.2
2,106	-		MPMX19_00002	0.44	-1.2
2,132	+		MPMX19_00002	0.47	+0.2
2,132	+		MPMX19_00002	0.47	-0.6
2,132	+		MPMX19_00002	0.47	+0.5
2,132	+		MPMX19_00002	0.47	-0.4
2,132	+		MPMX19_00002	0.47	-2.5
2,133	-		MPMX19_00002	0.47	+0.4
2,133	-		MPMX19_00002	0.47	-2.4
2,133	-		MPMX19_00002	0.47	+1.2
2,133	-		MPMX19_00002	0.47	-0.3
2,133	-		MPMX19_00002	0.47	-0.4
2,159	+		MPMX19_00002	0.50	+0.2
2,240	+		MPMX19_00002	0.59	+0.0
2,240	+		MPMX19_00002	0.59	-2.0
2,240	+		MPMX19_00002	0.59	-0.9
2,240	+		MPMX19_00002	0.59	+2.4
2,240	+		MPMX19_00002	0.59	-1.6
2,240	+		MPMX19_00002	0.59	+1.0
2,240	+		MPMX19_00002	0.59	+0.2
2,240	+		MPMX19_00002	0.59	+0.6
2,240	+		MPMX19_00002	0.59	-0.7
2,240	+		MPMX19_00002	0.59	-0.4
2,240	+		MPMX19_00002	0.59	+0.9
2,240	+		MPMX19_00002	0.59	-0.6
2,240	+		MPMX19_00002	0.59	-0.8
2,240	+		MPMX19_00002	0.59	+0.1
2,240	+		MPMX19_00002	0.59	+1.3
2,240	+		MPMX19_00002	0.59	+1.1
2,240	+		MPMX19_00002	0.59	+0.5
2,240	+		MPMX19_00002	0.59	-0.4
2,240	+		MPMX19_00002	0.59	+0.5
2,240	+		MPMX19_00002	0.59	+0.1
2,240	+		MPMX19_00002	0.59	-0.0
2,240	+		MPMX19_00002	0.59	-1.0
2,240	+		MPMX19_00002	0.59	-0.4
2,240	+		MPMX19_00002	0.59	-0.5
2,240	+		MPMX19_00002	0.59	+0.5
2,240	+		MPMX19_00002	0.59	-0.1
2,240	+		MPMX19_00002	0.59	+0.0
2,240	+		MPMX19_00002	0.59	+0.3
2,240	+		MPMX19_00002	0.59	+0.4
2,241	-		MPMX19_00002	0.59	-1.5
2,241	-		MPMX19_00002	0.59	+1.6
2,241	-		MPMX19_00002	0.59	+0.6
2,241	-		MPMX19_00002	0.59	-2.0
2,241	-		MPMX19_00002	0.59	+1.1
2,241	-		MPMX19_00002	0.59	+0.6
2,241	-		MPMX19_00002	0.59	-1.5
2,241	-		MPMX19_00002	0.59	-0.8
2,241	-		MPMX19_00002	0.59	-0.4
2,241	-		MPMX19_00002	0.59	-1.0
2,241	-		MPMX19_00002	0.59	+0.0
2,241	-		MPMX19_00002	0.59	+0.6
2,241	-		MPMX19_00002	0.59	-0.1
2,241	-		MPMX19_00002	0.59	+1.6
2,241	-		MPMX19_00002	0.59	-0.8
2,241	-		MPMX19_00002	0.59	+0.3
2,241	-		MPMX19_00002	0.59	-0.5
2,241	-		MPMX19_00002	0.59	-1.4
2,241	-		MPMX19_00002	0.59	-2.4
2,537	+				-0.8
2,537	+				+0.4
2,537	+				-1.5
2,537	+				+0.5
2,537	+				-0.7
2,537	+				-1.0
2,538	-				+0.2
2,538	-				-0.2
2,538	-				-0.4
2,538	-				-1.6
2,612	+				-1.5
2,612	+				-1.5
2,612	+				-0.8
2,612	+				-2.1
2,612	+				-0.7
2,612	+				-1.0
2,612	+				-0.2
2,612	+				-1.1
2,612	+				-0.2
2,612	+				-0.1
2,612	+				+0.5
2,612	+				-0.8
2,612	+				+1.0
2,612	+				-0.8
2,612	+				+0.3
2,612	+				-1.6
2,612	+				-1.2
2,612	+				+0.8
2,612	+				+0.2
2,612	+				+1.2
2,612	+				-0.2
2,612	+				-1.5
2,612	+				-0.0
2,612	+				-0.8
2,612	+				-1.4
2,613	-				-0.7
2,613	-				+0.4
2,613	-				+1.4
2,613	-				+1.0
2,613	-				-0.5
2,613	-				-0.5
2,613	-				-1.5
2,613	-				-0.5
2,613	-				+1.3
2,613	-				-1.1
2,613	-				-1.5
2,613	-				-0.0
2,613	-				-0.9
2,613	-				-0.8
2,613	-				-1.0
2,613	-				-0.9
2,613	-				+0.4
2,613	-				-1.2
2,613	-				+0.2
2,613	-				-0.4
2,613	-				-2.0
2,613	-				-0.4
2,613	-				-0.0
2,613	-				+1.0
2,613	-				-0.4
2,613	-				-1.0
2,613	-				+0.3
2,613	-				-1.4
2,613	-				-0.4
2,613	-				-0.4
2,670	+				-1.1
2,687	+				-1.1
2,687	+				-1.2
2,687	+				+0.0
2,687	+				-0.4
2,688	-				-0.1
2,688	-				-1.1
2,688	-				-0.7
2,688	-				-0.1
2,688	-				-0.2
2,688	-				-1.2
2,688	-				-1.2
2,688	-				-0.2
2,688	-				-0.2
2,734	+				-1.0
2,734	+				-1.2
2,734	+				+1.2
2,734	+				+0.9
2,735	-				+0.2
2,735	-				-1.0
2,735	-				+0.6
2,735	-				-0.3
2,735	-				-1.3
2,735	-				-0.2
2,735	-				-0.4
3,041	+		MPMX19_00003	0.17	+0.6
3,041	+		MPMX19_00003	0.17	+1.2
3,041	+		MPMX19_00003	0.17	+0.5
3,042	-		MPMX19_00003	0.18	+0.5
3,042	-		MPMX19_00003	0.18	-0.4
3,042	-		MPMX19_00003	0.18	-0.7
3,042	-		MPMX19_00003	0.18	-1.7
3,042	-		MPMX19_00003	0.18	-0.7
3,107	+		MPMX19_00003	0.23	+0.8
3,107	+		MPMX19_00003	0.23	-0.3
3,107	+		MPMX19_00003	0.23	-0.4
3,107	+		MPMX19_00003	0.23	-0.6
3,108	-		MPMX19_00003	0.23	-1.2
3,108	-		MPMX19_00003	0.23	-2.0
3,108	-		MPMX19_00003	0.23	-0.2
3,108	-		MPMX19_00003	0.23	+0.2
3,200	+		MPMX19_00003	0.31	-1.4
3,200	+		MPMX19_00003	0.31	-0.5
3,200	+		MPMX19_00003	0.31	-0.4
3,200	+		MPMX19_00003	0.31	-1.3
3,200	+		MPMX19_00003	0.31	-1.0
3,200	+		MPMX19_00003	0.31	-1.0
3,200	+		MPMX19_00003	0.31	-0.2
3,200	+		MPMX19_00003	0.31	-0.8
3,200	+		MPMX19_00003	0.31	+0.1
3,200	+		MPMX19_00003	0.31	-1.6
3,200	+		MPMX19_00003	0.31	-0.4
3,200	+		MPMX19_00003	0.31	-1.0
3,200	+		MPMX19_00003	0.31	-1.0
3,200	+		MPMX19_00003	0.31	-0.4
3,201	-		MPMX19_00003	0.31	-0.3
3,201	-		MPMX19_00003	0.31	-0.5
3,201	-		MPMX19_00003	0.31	-0.7
3,201	-		MPMX19_00003	0.31	-1.0
3,201	-		MPMX19_00003	0.31	+0.9
3,201	-		MPMX19_00003	0.31	-0.4
3,201	-		MPMX19_00003	0.31	-0.5
3,201	-		MPMX19_00003	0.31	-1.3
3,201	-		MPMX19_00003	0.31	-0.8
3,201	-		MPMX19_00003	0.31	-0.4
3,201	-		MPMX19_00003	0.31	-1.4
3,201	-		MPMX19_00003	0.31	+0.7
3,201	-		MPMX19_00003	0.31	-1.5
3,201	-		MPMX19_00003	0.31	-2.1
3,317	+		MPMX19_00003	0.41	-0.0
3,317	+		MPMX19_00003	0.41	-1.2
3,317	+		MPMX19_00003	0.41	-0.5
3,317	+		MPMX19_00003	0.41	-0.2
3,318	-		MPMX19_00003	0.41	+0.3
3,318	-		MPMX19_00003	0.41	+0.6
3,318	-		MPMX19_00003	0.41	+0.0
3,318	-		MPMX19_00003	0.41	-1.2
3,318	-		MPMX19_00003	0.41	-0.7
3,318	-		MPMX19_00003	0.41	-1.0
3,356	+		MPMX19_00003	0.44	-0.2
3,357	-		MPMX19_00003	0.44	-0.4
3,383	+		MPMX19_00003	0.46	-1.2
3,398	+		MPMX19_00003	0.47	-0.7
3,398	+		MPMX19_00003	0.47	-1.5
3,398	+		MPMX19_00003	0.47	+0.5
3,398	+		MPMX19_00003	0.47	+0.5
3,398	+		MPMX19_00003	0.47	-0.1
3,398	+		MPMX19_00003	0.47	-1.5
3,398	+		MPMX19_00003	0.47	+0.4
3,399	-		MPMX19_00003	0.47	-0.4
3,399	-		MPMX19_00003	0.47	-1.2
3,399	-		MPMX19_00003	0.47	-2.0
3,399	-		MPMX19_00003	0.47	+0.0
3,399	-		MPMX19_00003	0.47	-1.0
3,399	-		MPMX19_00003	0.47	-1.8