Strain Fitness in Methylophilus sp. DMC18 around GFF99

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
105,848	+		GFF97	0.79	-1.6
105,849	-		GFF97	0.79	-0.3
105,849	-		GFF97	0.79	-1.0
105,849	-		GFF97	0.79	+1.2
105,850	+		GFF97	0.80	-3.0
105,850	+		GFF97	0.80	-0.7
105,850	+		GFF97	0.80	+0.2
105,850	+		GFF97	0.80	+0.7
105,850	+		GFF97	0.80	-0.2
105,850	+		GFF97	0.80	-1.3
105,850	+		GFF97	0.80	-0.0
105,851	-		GFF97	0.80	-0.0
105,851	-		GFF97	0.80	-0.2
105,851	-		GFF97	0.80	-2.2
105,851	-		GFF97	0.80	-0.2
105,851	-		GFF97	0.80	-0.0
105,894	+				-1.3
105,894	+				-2.2
105,894	+				-0.3
105,894	+				+0.7
105,894	+				-0.0
105,895	-				-0.6
105,895	-				+0.4
105,895	-				-0.7
105,900	+				-1.2
105,900	+				+1.5
105,901	-				+0.1
105,901	-				+0.1
105,901	-				+1.0
105,904	-				-0.8
105,904	-				-0.4
105,904	-				-2.2
105,953	+				-1.6
105,953	+				-0.8
105,953	+				+0.1
105,954	-				-0.7
105,954	-				-0.3
105,954	-				-2.0
105,954	-				+0.2
106,027	+		GFF98	0.13	-0.3
106,028	-		GFF98	0.13	+0.1
106,044	-		GFF98	0.15	+0.6
106,044	-		GFF98	0.15	-0.9
106,086	+		GFF98	0.21	-0.3
106,086	+		GFF98	0.21	+0.5
106,086	+		GFF98	0.21	+0.7
106,087	-		GFF98	0.21	+0.1
106,087	-		GFF98	0.21	-0.5
106,087	-		GFF98	0.21	+0.3
106,113	-		GFF98	0.25	-0.2
106,113	-		GFF98	0.25	+0.2
106,113	-		GFF98	0.25	+0.5
106,113	-		GFF98	0.25	-0.0
106,239	+		GFF98	0.42	+1.6
106,239	+		GFF98	0.42	-1.0
106,239	+		GFF98	0.42	-0.5
106,240	-		GFF98	0.43	-1.6
106,240	-		GFF98	0.43	+0.1
106,242	-		GFF98	0.43	-1.6
106,242	-		GFF98	0.43	-1.2
106,242	-		GFF98	0.43	-1.1
106,242	-		GFF98	0.43	+0.6
106,250	+		GFF98	0.44	-0.1
106,251	-		GFF98	0.44	-1.0
106,251	-		GFF98	0.44	-1.2
106,251	-		GFF98	0.44	-0.8
106,251	-		GFF98	0.44	-0.3
106,251	-		GFF98	0.44	+0.5
106,251	-		GFF98	0.44	-0.0
106,281	-		GFF98	0.48	+0.2
106,281	-		GFF98	0.48	-0.8
106,281	-		GFF98	0.48	-0.4
106,281	-		GFF98	0.48	-1.0
106,283	-		GFF98	0.49	-0.8
106,283	-		GFF98	0.49	-0.4
106,305	-		GFF98	0.52	-0.5
106,321	+		GFF98	0.54	-1.3
106,322	-		GFF98	0.54	-0.2
106,343	-		GFF98	0.57	-0.1
106,384	+		GFF98	0.63	-0.0
106,385	-		GFF98	0.63	-1.0
106,385	-		GFF98	0.63	-0.3
106,386	+		GFF98	0.63	-0.0
106,386	+		GFF98	0.63	-0.5
106,386	+		GFF98	0.63	+0.7
106,387	-		GFF98	0.63	+1.2
106,387	-		GFF98	0.63	-1.3
106,387	-		GFF98	0.63	-2.5
106,387	-		GFF98	0.63	-0.4
106,387	-		GFF98	0.63	-1.3
106,387	-		GFF98	0.63	-1.3
106,387	-		GFF98	0.63	-1.5
106,387	-		GFF98	0.63	-0.3
106,387	-		GFF98	0.63	-0.6
106,411	+		GFF98	0.66	+0.0
106,412	-		GFF98	0.67	-1.0
106,417	+		GFF98	0.67	-1.9
106,417	+		GFF98	0.67	-0.5
106,418	-		GFF98	0.67	-0.0
106,418	-		GFF98	0.67	-1.0
106,418	-		GFF98	0.67	-0.9
106,426	-		GFF98	0.68	-0.2
106,452	+		GFF98	0.72	+0.7
106,452	+		GFF98	0.72	-2.0
106,452	+		GFF98	0.72	+0.8
106,453	-		GFF98	0.72	+0.7
106,453	-		GFF98	0.72	-1.3
106,453	-		GFF98	0.72	-0.1
106,453	-		GFF98	0.72	-1.8
106,456	+		GFF98	0.73	-1.9
106,456	+		GFF98	0.73	-1.0
106,456	+		GFF98	0.73	-0.5
106,456	+		GFF98	0.73	+0.4
106,456	+		GFF98	0.73	+0.4
106,456	+		GFF98	0.73	-0.3
106,456	+		GFF98	0.73	-0.8
106,456	+		GFF98	0.73	-1.2
106,456	+		GFF98	0.73	+0.1
106,457	-		GFF98	0.73	-0.3
106,457	-		GFF98	0.73	-0.6
106,457	-		GFF98	0.73	+0.6
106,457	-		GFF98	0.73	-1.8
106,457	-		GFF98	0.73	-0.1
106,457	-		GFF98	0.73	+0.4
106,457	-		GFF98	0.73	+0.4
106,457	-		GFF98	0.73	-1.1
106,457	-		GFF98	0.73	+0.4
106,457	-		GFF98	0.73	-1.6
106,457	-		GFF98	0.73	-0.4
106,457	-		GFF98	0.73	-0.7
106,457	-		GFF98	0.73	-1.3
106,571	-		GFF98	0.89	-0.8
106,624	+				-0.0
106,624	+				+0.7
106,624	+				+0.7
106,624	+				+1.7
106,624	+				-0.0
106,624	+				+1.0
106,625	-				+0.7
106,625	-				-0.3
106,625	-				+0.1
106,631	+				-0.8
106,663	-				+0.6
106,745	+				-0.2
106,745	+				-0.0
106,746	-				-0.5
106,746	-				-1.2
106,765	+				+0.4
106,771	+				-1.1
106,771	+				-0.4
106,771	+				-0.2
106,771	+				+1.0
106,772	-				-0.2
106,772	-				+0.1
106,774	+				+0.2
106,774	+				-1.0
106,774	+				+0.2
106,774	+				-0.0
106,774	+				+0.6
106,774	+				-0.0
106,774	+				-0.9
106,774	+				-0.0
106,775	-				-1.6
106,775	-				+0.5
106,775	-				-0.2
106,775	-				-0.2
106,886	+		GFF99	0.16	-1.2
106,887	-		GFF99	0.16	+0.4
106,887	-		GFF99	0.16	-0.8
106,887	-		GFF99	0.16	-0.7
106,898	+		GFF99	0.18	-0.8
106,898	+		GFF99	0.18	-2.5
106,898	+		GFF99	0.18	-0.7
106,899	-		GFF99	0.18	-1.9
106,936	+		GFF99	0.23	+0.6
106,936	+		GFF99	0.23	-0.0
106,936	+		GFF99	0.23	-0.9
106,937	-		GFF99	0.23	-1.1
106,937	-		GFF99	0.23	-1.0
106,939	+		GFF99	0.23	-0.0
106,939	+		GFF99	0.23	-1.1
106,939	+		GFF99	0.23	-2.2
106,939	+		GFF99	0.23	-0.8
106,940	-		GFF99	0.23	-1.0
106,959	+		GFF99	0.25	+1.0
106,959	+		GFF99	0.25	+0.5
106,962	+		GFF99	0.26	+0.2
106,962	+		GFF99	0.26	-0.8
106,962	+		GFF99	0.26	+0.6
106,962	+		GFF99	0.26	-0.7
106,962	+		GFF99	0.26	+0.2
106,962	+		GFF99	0.26	-1.9
106,963	-		GFF99	0.26	-1.3
106,963	-		GFF99	0.26	+0.7
106,984	+		GFF99	0.29	-0.3
106,999	+		GFF99	0.30	-0.8
107,000	-		GFF99	0.31	+1.0
107,062	+		GFF99	0.38	+1.2
107,109	+		GFF99	0.44	-0.6
107,109	+		GFF99	0.44	-0.6
107,109	+		GFF99	0.44	-1.0
107,116	+		GFF99	0.45	-0.3
107,183	+		GFF99	0.54	-0.8
107,200	+		GFF99	0.56	-2.2
107,201	-		GFF99	0.56	+0.5
107,252	-		GFF99	0.62	-2.5
107,345	+		GFF99	0.74	+0.3
107,449	+		GFF99	0.87	-0.0
107,449	+		GFF99	0.87	-1.0
107,450	-		GFF99	0.87	-0.7
107,450	-		GFF99	0.87	-0.8
107,549	+				+0.7
107,549	+				-1.1
107,549	+				-0.7
107,550	-				-0.1
107,550	-				+1.3
107,550	-				-1.3
107,550	-				+0.2
107,560	+				+1.2
107,561	-				-0.7
107,626	+				-0.0
107,626	+				-0.7
107,626	+				-1.5
107,626	+				-0.4
107,626	+				-1.6
107,626	+				-1.2
107,626	+				-0.8
107,627	-				+0.1
107,627	-				-0.1
107,627	-				+0.6
107,627	-				-0.3
107,627	-				-1.5
107,627	-				+0.6
107,717	+		GFF100	0.18	-1.3
107,717	+		GFF100	0.18	-0.7
107,717	+		GFF100	0.18	-0.3
107,717	+		GFF100	0.18	-2.2
107,718	-		GFF100	0.18	-0.4
107,758	-		GFF100	0.23	-1.0
107,758	-		GFF100	0.23	-1.3
107,775	+		GFF100	0.25	-0.8
107,775	+		GFF100	0.25	+1.3
107,781	+		GFF100	0.25	-0.0
107,781	+		GFF100	0.25	-0.5
107,781	+		GFF100	0.25	-0.1
107,781	+		GFF100	0.25	-1.0
107,781	+		GFF100	0.25	+0.6
107,781	+		GFF100	0.25	-0.5
107,782	-		GFF100	0.26	-0.6
107,782	-		GFF100	0.26	-1.0
107,782	-		GFF100	0.26	-0.5
107,782	-		GFF100	0.26	-0.0
107,782	-		GFF100	0.26	-0.4
107,782	-		GFF100	0.26	+0.2
107,782	-		GFF100	0.26	-1.5
107,782	-		GFF100	0.26	-1.3
107,782	-		GFF100	0.26	-1.0
107,782	-		GFF100	0.26	-0.6
107,793	+		GFF100	0.27	-0.6
107,793	+		GFF100	0.27	-2.0
107,793	+		GFF100	0.27	-0.8
107,794	-		GFF100	0.27	+0.0
107,794	-		GFF100	0.27	+0.4
107,794	-		GFF100	0.27	-1.3
107,998	+		GFF100	0.50	+0.4
107,998	+		GFF100	0.50	+0.3
107,999	-		GFF100	0.50	-0.0
108,018	+		GFF100	0.53	-1.0
108,052	+		GFF100	0.56	-1.0
108,053	-		GFF100	0.57	+0.4
108,080	+		GFF100	0.60	-0.4
108,080	+		GFF100	0.60	-1.0
108,081	-		GFF100	0.60	-2.2
108,081	-		GFF100	0.60	-0.2
108,081	-		GFF100	0.60	+1.5
108,081	-		GFF100	0.60	-0.6
108,081	-		GFF100	0.60	-0.2
108,115	-		GFF100	0.64	-0.0
108,162	-		GFF100	0.69	-0.7
108,165	+		GFF100	0.69	-1.3
108,165	+		GFF100	0.69	-1.6
108,192	+		GFF100	0.73	-0.8
108,252	-		GFF100	0.79	-1.3
108,392	+				-0.0
108,393	-				+0.3
108,402	+				-1.3
108,402	+				-1.7
108,402	+				+0.6
108,403	-				-0.3
108,403	-				-1.6
108,403	-				+0.2
108,403	-				-0.3
108,439	-				-0.3
108,509	-				-0.0
108,519	+				-1.0
108,520	-				+0.7
108,533	+				-1.0