Strain Fitness in Methylophilus sp. DMC18 around GFF841

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF839 and GFF840 are separated by 4 nucleotidesGFF840 and GFF841 are separated by 245 nucleotidesGFF841 and GFF842 are separated by 84 nucleotidesGFF842 and GFF843 overlap by 11 nucleotides GFF839 - Nicotinamide-nucleotide amidohydrolase PncC, at 77,423 to 77,923 GFF839 GFF840 - hypothetical protein, at 77,928 to 78,290 GFF840 GFF841 - Protein RecA, at 78,536 to 79,564 GFF841 GFF842 - Regulatory protein RecX, at 79,649 to 80,104 GFF842 GFF843 - Alanine--tRNA ligase, at 80,094 to 82,730 GFF843 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1at 77.582 kb on + strand, within GFF839at 77.583 kb on - strand, within GFF839at 77.583 kb on - strand, within GFF839at 77.583 kb on - strand, within GFF839at 77.688 kb on + strand, within GFF839at 77.707 kb on + strand, within GFF839at 77.722 kb on - strand, within GFF839at 77.756 kb on + strand, within GFF839at 77.756 kb on + strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.757 kb on - strand, within GFF839at 77.775 kb on + strand, within GFF839at 77.775 kb on + strand, within GFF839at 77.776 kb on - strand, within GFF839at 77.776 kb on - strand, within GFF839at 77.839 kb on + strand, within GFF839at 77.859 kb on + strand, within GFF839at 77.859 kb on + strand, within GFF839at 77.859 kb on + strand, within GFF839at 77.859 kb on + strand, within GFF839at 77.859 kb on + strand, within GFF839at 77.860 kb on - strand, within GFF839at 77.860 kb on - strand, within GFF839at 77.860 kb on - strand, within GFF839at 77.879 kb on + strandat 77.880 kb on - strandat 77.880 kb on - strandat 77.883 kb on + strandat 77.883 kb on + strandat 77.884 kb on - strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.898 kb on + strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.899 kb on - strandat 77.902 kb on + strandat 77.902 kb on + strandat 77.902 kb on + strandat 77.930 kb on - strandat 77.930 kb on - strandat 77.930 kb on - strandat 77.980 kb on + strand, within GFF840at 77.980 kb on + strand, within GFF840at 77.980 kb on + strand, within GFF840at 77.980 kb on + strand, within GFF840at 77.980 kb on + strand, within GFF840at 77.981 kb on - strand, within GFF840at 77.981 kb on - strand, within GFF840at 77.981 kb on - strand, within GFF840at 77.981 kb on - strand, within GFF840at 77.981 kb on - strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.983 kb on + strand, within GFF840at 77.984 kb on - strand, within GFF840at 77.984 kb on - strand, within GFF840at 77.984 kb on - strand, within GFF840at 77.984 kb on - strand, within GFF840at 77.984 kb on - strand, within GFF840at 77.984 kb on - strand, within GFF840at 77.998 kb on + strand, within GFF840at 77.998 kb on + strand, within GFF840at 77.998 kb on + strand, within GFF840at 77.998 kb on + strand, within GFF840at 77.998 kb on + strand, within GFF840at 77.998 kb on + strand, within GFF840at 77.999 kb on - strand, within GFF840at 77.999 kb on - strand, within GFF840at 77.999 kb on - strand, within GFF840at 77.999 kb on - strand, within GFF840at 77.999 kb on - strand, within GFF840at 77.999 kb on - strand, within GFF840at 77.999 kb on - strand, within GFF840at 78.005 kb on - strand, within GFF840at 78.029 kb on - strand, within GFF840at 78.041 kb on + strand, within GFF840at 78.042 kb on - strand, within GFF840at 78.042 kb on - strand, within GFF840at 78.076 kb on + strand, within GFF840at 78.076 kb on + strand, within GFF840at 78.095 kb on + strand, within GFF840at 78.095 kb on + strand, within GFF840at 78.095 kb on + strand, within GFF840at 78.095 kb on + strand, within GFF840at 78.096 kb on - strand, within GFF840at 78.096 kb on - strand, within GFF840at 78.097 kb on + strand, within GFF840at 78.097 kb on + strand, within GFF840at 78.097 kb on + strand, within GFF840at 78.097 kb on + strand, within GFF840at 78.097 kb on + strand, within GFF840at 78.097 kb on + strand, within GFF840at 78.098 kb on - strand, within GFF840at 78.098 kb on - strand, within GFF840at 78.098 kb on - strand, within GFF840at 78.098 kb on - strand, within GFF840at 78.098 kb on - strand, within GFF840at 78.100 kb on + strand, within GFF840at 78.100 kb on + strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.101 kb on - strand, within GFF840at 78.103 kb on + strand, within GFF840at 78.148 kb on + strand, within GFF840at 78.148 kb on + strand, within GFF840at 78.169 kb on + strand, within GFF840at 78.172 kb on + strand, within GFF840at 78.173 kb on - strand, within GFF840at 78.173 kb on - strand, within GFF840at 78.173 kb on - strand, within GFF840at 78.196 kb on - strand, within GFF840at 78.218 kb on + strand, within GFF840at 78.218 kb on + strand, within GFF840at 78.218 kb on + strand, within GFF840at 78.218 kb on + strand, within GFF840at 78.219 kb on - strand, within GFF840at 78.219 kb on - strand, within GFF840at 78.219 kb on - strand, within GFF840at 78.279 kb on - strandat 78.290 kb on + strandat 78.290 kb on + strandat 78.290 kb on + strandat 78.290 kb on + strandat 78.291 kb on - strandat 78.291 kb on - strandat 78.291 kb on - strandat 78.291 kb on - strandat 78.332 kb on + strandat 78.332 kb on + strandat 78.332 kb on + strandat 78.332 kb on + strandat 78.332 kb on + strandat 78.333 kb on - strandat 78.333 kb on - strandat 78.333 kb on - strandat 78.333 kb on - strandat 78.333 kb on - strandat 78.333 kb on - strandat 78.333 kb on - strandat 78.335 kb on + strandat 78.418 kb on + strandat 78.418 kb on + strandat 78.419 kb on - strandat 78.419 kb on - strandat 78.471 kb on + strandat 78.483 kb on + strandat 79.187 kb on + strand, within GFF841at 79.300 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.321 kb on + strand, within GFF841at 79.325 kb on + strand, within GFF841at 79.408 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.412 kb on + strand, within GFF841at 79.531 kb on + strandat 79.562 kb on + strandat 79.671 kb on + strandat 79.686 kb on + strandat 79.686 kb on + strandat 79.691 kb on + strandat 79.691 kb on + strandat 79.709 kb on + strand, within GFF842at 79.745 kb on + strand, within GFF842at 79.846 kb on + strand, within GFF842at 79.884 kb on + strand, within GFF842at 79.884 kb on + strand, within GFF842at 80.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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77,582 + GFF839 0.32 -1.2
77,583 - GFF839 0.32 +0.8
77,583 - GFF839 0.32 -0.4
77,583 - GFF839 0.32 +1.3
77,688 + GFF839 0.53 +0.0
77,707 + GFF839 0.57 -2.5
77,722 - GFF839 0.60 -2.0
77,756 + GFF839 0.66 -0.7
77,756 + GFF839 0.66 -0.1
77,757 - GFF839 0.67 +1.6
77,757 - GFF839 0.67 -0.1
77,757 - GFF839 0.67 +0.0
77,757 - GFF839 0.67 -1.4
77,757 - GFF839 0.67 -0.5
77,757 - GFF839 0.67 -2.4
77,757 - GFF839 0.67 -0.1
77,757 - GFF839 0.67 -0.5
77,757 - GFF839 0.67 -2.1
77,775 + GFF839 0.70 -1.4
77,775 + GFF839 0.70 -1.8
77,776 - GFF839 0.70 -0.4
77,776 - GFF839 0.70 -0.1
77,839 + GFF839 0.83 -0.4
77,859 + GFF839 0.87 +1.4
77,859 + GFF839 0.87 -0.5
77,859 + GFF839 0.87 -0.2
77,859 + GFF839 0.87 -1.1
77,859 + GFF839 0.87 -0.4
77,860 - GFF839 0.87 -1.0
77,860 - GFF839 0.87 +0.5
77,860 - GFF839 0.87 -0.5
77,879 + -0.2
77,880 - -1.1
77,880 - -0.9
77,883 + -0.7
77,883 + +0.5
77,884 - +0.7
77,898 + +0.1
77,898 + -0.9
77,898 + -1.1
77,899 - -1.3
77,899 - +0.1
77,899 - -2.2
77,899 - -1.3
77,902 + -0.5
77,902 + -1.1
77,902 + -0.9
77,930 - +0.9
77,930 - -0.0
77,930 - -0.9
77,980 + GFF840 0.14 +0.1
77,980 + GFF840 0.14 -0.2
77,980 + GFF840 0.14 -1.2
77,980 + GFF840 0.14 -0.5
77,980 + GFF840 0.14 -0.4
77,981 - GFF840 0.15 -0.6
77,981 - GFF840 0.15 -1.1
77,981 - GFF840 0.15 -0.4
77,981 - GFF840 0.15 +0.3
77,981 - GFF840 0.15 -0.2
77,983 + GFF840 0.15 -3.1
77,983 + GFF840 0.15 -0.1
77,983 + GFF840 0.15 -0.1
77,983 + GFF840 0.15 +0.0
77,983 + GFF840 0.15 -1.5
77,983 + GFF840 0.15 +0.1
77,983 + GFF840 0.15 -1.2
77,983 + GFF840 0.15 +0.5
77,983 + GFF840 0.15 -1.6
77,983 + GFF840 0.15 -0.7
77,983 + GFF840 0.15 -0.1
77,983 + GFF840 0.15 -0.1
77,984 - GFF840 0.15 +0.5
77,984 - GFF840 0.15 -0.5
77,984 - GFF840 0.15 -0.1
77,984 - GFF840 0.15 -1.1
77,984 - GFF840 0.15 +0.4
77,984 - GFF840 0.15 +0.0
77,998 + GFF840 0.19 -0.5
77,998 + GFF840 0.19 +1.3
77,998 + GFF840 0.19 -0.5
77,998 + GFF840 0.19 -2.2
77,998 + GFF840 0.19 -0.3
77,998 + GFF840 0.19 -1.4
77,999 - GFF840 0.20 -0.1
77,999 - GFF840 0.20 -2.1
77,999 - GFF840 0.20 +0.5
77,999 - GFF840 0.20 -1.2
77,999 - GFF840 0.20 -0.5
77,999 - GFF840 0.20 -0.5
77,999 - GFF840 0.20 -1.1
78,005 - GFF840 0.21 -0.1
78,029 - GFF840 0.28 -0.3
78,041 + GFF840 0.31 -0.9
78,042 - GFF840 0.31 +0.9
78,042 - GFF840 0.31 -0.2
78,076 + GFF840 0.41 -0.4
78,076 + GFF840 0.41 -1.0
78,095 + GFF840 0.46 -0.2
78,095 + GFF840 0.46 -0.5
78,095 + GFF840 0.46 -0.2
78,095 + GFF840 0.46 -0.4
78,096 - GFF840 0.46 -0.1
78,096 - GFF840 0.46 -0.4
78,097 + GFF840 0.47 -0.9
78,097 + GFF840 0.47 -1.2
78,097 + GFF840 0.47 +0.6
78,097 + GFF840 0.47 +0.5
78,097 + GFF840 0.47 -0.8
78,097 + GFF840 0.47 +0.1
78,098 - GFF840 0.47 -0.1
78,098 - GFF840 0.47 +0.1
78,098 - GFF840 0.47 -1.1
78,098 - GFF840 0.47 -0.8
78,098 - GFF840 0.47 +0.4
78,100 + GFF840 0.47 -0.9
78,100 + GFF840 0.47 -0.6
78,101 - GFF840 0.48 -0.4
78,101 - GFF840 0.48 -0.3
78,101 - GFF840 0.48 -0.8
78,101 - GFF840 0.48 -0.1
78,101 - GFF840 0.48 -1.4
78,101 - GFF840 0.48 +0.9
78,101 - GFF840 0.48 -0.1
78,101 - GFF840 0.48 -0.5
78,101 - GFF840 0.48 -0.8
78,101 - GFF840 0.48 -1.1
78,103 + GFF840 0.48 -0.3
78,148 + GFF840 0.61 -1.9
78,148 + GFF840 0.61 -0.1
78,169 + GFF840 0.66 -0.6
78,172 + GFF840 0.67 -1.4
78,173 - GFF840 0.67 -1.0
78,173 - GFF840 0.67 +0.4
78,173 - GFF840 0.67 +0.3
78,196 - GFF840 0.74 -1.6
78,218 + GFF840 0.80 -0.4
78,218 + GFF840 0.80 -1.4
78,218 + GFF840 0.80 -0.7
78,218 + GFF840 0.80 -0.4
78,219 - GFF840 0.80 -0.1
78,219 - GFF840 0.80 +0.1
78,219 - GFF840 0.80 -0.5
78,279 - -1.1
78,290 + -0.5
78,290 + -2.1
78,290 + -1.6
78,290 + -0.5
78,291 - -1.1
78,291 - +0.5
78,291 - -0.6
78,291 - -1.2
78,332 + +1.3
78,332 + -0.6
78,332 + -1.1
78,332 + +0.2
78,332 + -1.2
78,333 - -1.1
78,333 - -0.2
78,333 - +0.4
78,333 - -0.9
78,333 - -0.1
78,333 - -0.3
78,333 - -1.1
78,335 + +0.2
78,418 + -1.4
78,418 + -1.1
78,419 - -0.6
78,419 - -1.8
78,471 + -0.6
78,483 + -0.2
79,187 + GFF841 0.63 -1.6
79,300 + GFF841 0.74 -1.2
79,321 + GFF841 0.76 -1.6
79,321 + GFF841 0.76 -0.1
79,321 + GFF841 0.76 -0.1
79,321 + GFF841 0.76 -0.1
79,321 + GFF841 0.76 -0.6
79,321 + GFF841 0.76 -2.9
79,321 + GFF841 0.76 -1.5
79,321 + GFF841 0.76 +0.5
79,325 + GFF841 0.77 +0.3
79,408 + GFF841 0.85 +0.5
79,412 + GFF841 0.85 -1.6
79,412 + GFF841 0.85 +0.1
79,412 + GFF841 0.85 +0.6
79,412 + GFF841 0.85 -0.1
79,412 + GFF841 0.85 -0.3
79,412 + GFF841 0.85 -1.4
79,412 + GFF841 0.85 +0.6
79,531 + +0.6
79,562 + +0.4
79,671 + -1.1
79,686 + -0.9
79,686 + -1.1
79,691 + +0.9
79,691 + +0.1
79,709 + GFF842 0.13 -1.6
79,745 + GFF842 0.21 -0.5
79,846 + GFF842 0.43 -0.6
79,884 + GFF842 0.52 -1.9
79,884 + GFF842 0.52 -1.1
80,065 + -2.8

Or see this region's nucleotide sequence