Strain Fitness in Methylophilus sp. DMC18 around GFF720

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF719 and GFF720 are separated by 73 nucleotidesGFF720 and GFF721 are separated by 5 nucleotidesGFF721 and GFF722 overlap by 4 nucleotides GFF719 - hypothetical protein, at 800,388 to 801,332 GFF719 GFF720 - Outer membrane lipoprotein Blc, at 801,406 to 801,936 GFF720 GFF721 - hypothetical protein, at 801,942 to 802,580 GFF721 GFF722 - hypothetical protein, at 802,577 to 803,344 GFF722 Position (kb) 801 802Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 800.434 kb on - strandat 800.442 kb on + strandat 800.443 kb on - strandat 800.443 kb on - strandat 800.486 kb on - strand, within GFF719at 800.488 kb on + strand, within GFF719at 800.489 kb on - strand, within GFF719at 800.489 kb on - strand, within GFF719at 800.597 kb on + strand, within GFF719at 800.597 kb on + strand, within GFF719at 800.598 kb on - strand, within GFF719at 800.716 kb on - strand, within GFF719at 800.737 kb on - strand, within GFF719at 800.749 kb on + strand, within GFF719at 800.750 kb on - strand, within GFF719at 800.750 kb on - strand, within GFF719at 800.750 kb on - strand, within GFF719at 800.750 kb on - strand, within GFF719at 800.762 kb on + strand, within GFF719at 800.763 kb on - strand, within GFF719at 800.763 kb on - strand, within GFF719at 800.763 kb on - strand, within GFF719at 800.763 kb on - strand, within GFF719at 800.869 kb on - strand, within GFF719at 800.869 kb on - strand, within GFF719at 800.908 kb on - strand, within GFF719at 800.948 kb on + strand, within GFF719at 800.949 kb on - strand, within GFF719at 801.018 kb on + strand, within GFF719at 801.045 kb on + strand, within GFF719at 801.046 kb on - strand, within GFF719at 801.046 kb on - strand, within GFF719at 801.046 kb on - strand, within GFF719at 801.046 kb on - strand, within GFF719at 801.046 kb on - strand, within GFF719at 801.101 kb on - strand, within GFF719at 801.111 kb on - strand, within GFF719at 801.133 kb on + strand, within GFF719at 801.133 kb on + strand, within GFF719at 801.134 kb on - strand, within GFF719at 801.181 kb on + strand, within GFF719at 801.182 kb on - strand, within GFF719at 801.184 kb on - strand, within GFF719at 801.184 kb on - strand, within GFF719at 801.237 kb on + strand, within GFF719at 801.237 kb on + strand, within GFF719at 801.237 kb on + strand, within GFF719at 801.238 kb on - strandat 801.307 kb on - strandat 801.351 kb on + strandat 801.351 kb on + strandat 801.371 kb on + strandat 801.371 kb on + strandat 801.372 kb on - strandat 801.372 kb on - strandat 801.408 kb on - strandat 801.408 kb on - strandat 801.408 kb on - strandat 801.434 kb on - strandat 801.469 kb on - strand, within GFF720at 801.486 kb on - strand, within GFF720at 801.530 kb on + strand, within GFF720at 801.530 kb on + strand, within GFF720at 801.531 kb on - strand, within GFF720at 801.531 kb on - strand, within GFF720at 801.531 kb on - strand, within GFF720at 801.531 kb on - strand, within GFF720at 801.531 kb on - strand, within GFF720at 801.531 kb on - strand, within GFF720at 801.544 kb on - strand, within GFF720at 801.559 kb on - strand, within GFF720at 801.559 kb on - strand, within GFF720at 801.559 kb on - strand, within GFF720at 801.581 kb on + strand, within GFF720at 801.582 kb on - strand, within GFF720at 801.657 kb on + strand, within GFF720at 801.658 kb on - strand, within GFF720at 801.675 kb on - strand, within GFF720at 801.675 kb on - strand, within GFF720at 801.675 kb on - strand, within GFF720at 801.694 kb on - strand, within GFF720at 801.694 kb on - strand, within GFF720at 801.709 kb on - strand, within GFF720at 801.730 kb on - strand, within GFF720at 801.730 kb on - strand, within GFF720at 801.730 kb on - strand, within GFF720at 801.771 kb on - strand, within GFF720at 801.812 kb on + strand, within GFF720at 801.813 kb on - strand, within GFF720at 801.813 kb on - strand, within GFF720at 801.813 kb on - strand, within GFF720at 801.905 kb on - strandat 802.018 kb on + strand, within GFF721at 802.019 kb on - strand, within GFF721at 802.047 kb on - strand, within GFF721at 802.108 kb on - strand, within GFF721at 802.147 kb on + strand, within GFF721at 802.148 kb on - strand, within GFF721at 802.148 kb on - strand, within GFF721at 802.148 kb on - strand, within GFF721at 802.166 kb on + strand, within GFF721at 802.166 kb on + strand, within GFF721at 802.171 kb on - strand, within GFF721at 802.171 kb on - strand, within GFF721at 802.189 kb on - strand, within GFF721at 802.220 kb on + strand, within GFF721at 802.220 kb on + strand, within GFF721at 802.220 kb on + strand, within GFF721at 802.221 kb on - strand, within GFF721at 802.261 kb on - strand, within GFF721at 802.272 kb on - strand, within GFF721at 802.272 kb on - strand, within GFF721at 802.272 kb on - strand, within GFF721at 802.385 kb on - strand, within GFF721at 802.385 kb on - strand, within GFF721at 802.392 kb on - strand, within GFF721at 802.395 kb on - strand, within GFF721at 802.395 kb on - strand, within GFF721at 802.395 kb on - strand, within GFF721at 802.395 kb on - strand, within GFF721at 802.395 kb on - strand, within GFF721at 802.486 kb on + strand, within GFF721at 802.487 kb on - strand, within GFF721at 802.531 kb on - strandat 802.548 kb on + strandat 802.549 kb on - strandat 802.571 kb on + strandat 802.571 kb on + strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.572 kb on - strandat 802.610 kb on - strandat 802.619 kb on - strandat 802.619 kb on - strandat 802.622 kb on - strandat 802.622 kb on - strandat 802.633 kb on - strandat 802.633 kb on - strandat 802.664 kb on - strand, within GFF722at 802.740 kb on + strand, within GFF722at 802.741 kb on - strand, within GFF722at 802.741 kb on - strand, within GFF722at 802.741 kb on - strand, within GFF722at 802.741 kb on - strand, within GFF722at 802.741 kb on - strand, within GFF722at 802.752 kb on + strand, within GFF722at 802.819 kb on - strand, within GFF722at 802.842 kb on - strand, within GFF722at 802.908 kb on + strand, within GFF722at 802.908 kb on + strand, within GFF722at 802.911 kb on - strand, within GFF722at 802.926 kb on - strand, within GFF722at 802.926 kb on - strand, within GFF722at 802.926 kb on - strand, within GFF722at 802.926 kb on - strand, within GFF722at 802.926 kb on - strand, within GFF722at 802.932 kb on - strand, within GFF722at 802.932 kb on - strand, within GFF722at 802.932 kb on - strand, within GFF722at 802.932 kb on - strand, within GFF722

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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800,434 - -0.1
800,442 + +0.2
800,443 - -1.3
800,443 - -1.8
800,486 - GFF719 0.10 +1.1
800,488 + GFF719 0.11 -0.1
800,489 - GFF719 0.11 -0.6
800,489 - GFF719 0.11 -0.7
800,597 + GFF719 0.22 -1.6
800,597 + GFF719 0.22 -1.7
800,598 - GFF719 0.22 -0.6
800,716 - GFF719 0.35 -1.7
800,737 - GFF719 0.37 +0.1
800,749 + GFF719 0.38 +0.6
800,750 - GFF719 0.38 -0.2
800,750 - GFF719 0.38 -0.3
800,750 - GFF719 0.38 +0.9
800,750 - GFF719 0.38 -1.2
800,762 + GFF719 0.40 -1.1
800,763 - GFF719 0.40 -0.7
800,763 - GFF719 0.40 -0.2
800,763 - GFF719 0.40 -2.6
800,763 - GFF719 0.40 +1.2
800,869 - GFF719 0.51 -0.9
800,869 - GFF719 0.51 -1.4
800,908 - GFF719 0.55 +0.1
800,948 + GFF719 0.59 +0.5
800,949 - GFF719 0.59 +0.9
801,018 + GFF719 0.67 -1.1
801,045 + GFF719 0.70 -1.1
801,046 - GFF719 0.70 -0.6
801,046 - GFF719 0.70 -0.1
801,046 - GFF719 0.70 -0.1
801,046 - GFF719 0.70 +0.2
801,046 - GFF719 0.70 -0.4
801,101 - GFF719 0.75 +1.8
801,111 - GFF719 0.77 -1.1
801,133 + GFF719 0.79 +0.1
801,133 + GFF719 0.79 -1.2
801,134 - GFF719 0.79 -1.0
801,181 + GFF719 0.84 +0.9
801,182 - GFF719 0.84 -0.1
801,184 - GFF719 0.84 +1.7
801,184 - GFF719 0.84 -0.5
801,237 + GFF719 0.90 -1.7
801,237 + GFF719 0.90 -1.4
801,237 + GFF719 0.90 -0.6
801,238 - -1.4
801,307 - -1.1
801,351 + +0.2
801,351 + +0.6
801,371 + +0.1
801,371 + -0.4
801,372 - +0.1
801,372 - -0.4
801,408 - -0.1
801,408 - -0.5
801,408 - -0.3
801,434 - -0.3
801,469 - GFF720 0.12 -0.1
801,486 - GFF720 0.15 -1.7
801,530 + GFF720 0.23 +0.6
801,530 + GFF720 0.23 -0.2
801,531 - GFF720 0.24 +0.1
801,531 - GFF720 0.24 -1.2
801,531 - GFF720 0.24 -2.1
801,531 - GFF720 0.24 -0.2
801,531 - GFF720 0.24 -0.5
801,531 - GFF720 0.24 -1.4
801,544 - GFF720 0.26 -0.4
801,559 - GFF720 0.29 -1.7
801,559 - GFF720 0.29 -0.1
801,559 - GFF720 0.29 -0.5
801,581 + GFF720 0.33 +0.2
801,582 - GFF720 0.33 -1.0
801,657 + GFF720 0.47 -1.1
801,658 - GFF720 0.47 +0.1
801,675 - GFF720 0.51 +0.5
801,675 - GFF720 0.51 +0.5
801,675 - GFF720 0.51 -1.3
801,694 - GFF720 0.54 -0.7
801,694 - GFF720 0.54 -0.7
801,709 - GFF720 0.57 -0.7
801,730 - GFF720 0.61 -0.4
801,730 - GFF720 0.61 -0.4
801,730 - GFF720 0.61 +0.5
801,771 - GFF720 0.69 +0.0
801,812 + GFF720 0.76 +0.5
801,813 - GFF720 0.77 -0.4
801,813 - GFF720 0.77 -0.7
801,813 - GFF720 0.77 -0.4
801,905 - +0.0
802,018 + GFF721 0.12 -0.1
802,019 - GFF721 0.12 -0.2
802,047 - GFF721 0.16 -1.7
802,108 - GFF721 0.26 -0.4
802,147 + GFF721 0.32 -0.1
802,148 - GFF721 0.32 -0.5
802,148 - GFF721 0.32 +0.5
802,148 - GFF721 0.32 -0.2
802,166 + GFF721 0.35 +1.0
802,166 + GFF721 0.35 +0.3
802,171 - GFF721 0.36 +0.4
802,171 - GFF721 0.36 -0.4
802,189 - GFF721 0.39 -0.0
802,220 + GFF721 0.44 -1.7
802,220 + GFF721 0.44 -0.3
802,220 + GFF721 0.44 -1.4
802,221 - GFF721 0.44 +0.1
802,261 - GFF721 0.50 +0.4
802,272 - GFF721 0.52 -0.4
802,272 - GFF721 0.52 +1.1
802,272 - GFF721 0.52 -1.7
802,385 - GFF721 0.69 -0.3
802,385 - GFF721 0.69 -0.4
802,392 - GFF721 0.70 +0.6
802,395 - GFF721 0.71 -3.1
802,395 - GFF721 0.71 -1.0
802,395 - GFF721 0.71 -0.2
802,395 - GFF721 0.71 -1.7
802,395 - GFF721 0.71 -1.1
802,486 + GFF721 0.85 -1.4
802,487 - GFF721 0.85 -1.3
802,531 - +0.3
802,548 + -1.1
802,549 - -0.7
802,571 + +0.2
802,571 + +0.1
802,572 - -1.1
802,572 - -0.3
802,572 - -0.5
802,572 - -0.1
802,572 - -0.7
802,572 - -1.9
802,572 - -1.9
802,572 - -1.2
802,610 - -0.4
802,619 - +0.3
802,619 - -1.4
802,622 - -0.3
802,622 - -1.4
802,633 - -0.3
802,633 - -0.4
802,664 - GFF722 0.11 +0.6
802,740 + GFF722 0.21 -1.1
802,741 - GFF722 0.21 +0.1
802,741 - GFF722 0.21 +0.2
802,741 - GFF722 0.21 -1.2
802,741 - GFF722 0.21 -0.7
802,741 - GFF722 0.21 -0.1
802,752 + GFF722 0.23 -1.3
802,819 - GFF722 0.32 +0.5
802,842 - GFF722 0.35 +0.2
802,908 + GFF722 0.43 -1.7
802,908 + GFF722 0.43 -1.3
802,911 - GFF722 0.43 +0.3
802,926 - GFF722 0.45 -1.8
802,926 - GFF722 0.45 -1.7
802,926 - GFF722 0.45 -1.6
802,926 - GFF722 0.45 +0.2
802,926 - GFF722 0.45 -0.8
802,932 - GFF722 0.46 -0.1
802,932 - GFF722 0.46 -1.1
802,932 - GFF722 0.46 -1.4
802,932 - GFF722 0.46 -0.1

Or see this region's nucleotide sequence