Strain Fitness in Methylophilus sp. DMC18 around GFF658

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF656 and GFF657 are separated by 79 nucleotidesGFF657 and GFF658 are separated by 50 nucleotidesGFF658 and GFF659 overlap by 1 nucleotides GFF656 - Tryptophan synthase beta chain, at 728,356 to 729,558 GFF656 GFF657 - Tryptophan synthase alpha chain, at 729,638 to 730,438 GFF657 GFF658 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, at 730,489 to 731,355 GFF658 GFF659 - Dihydrofolate synthase/folylpolyglutamate synthase, at 731,355 to 732,650 GFF659 Position (kb) 730 731 732Strain fitness (log2 ratio) -1 0 1at 729.546 kb on + strandat 729.546 kb on + strandat 729.549 kb on + strandat 729.549 kb on + strandat 729.549 kb on + strandat 730.413 kb on + strandat 730.454 kb on + strandat 730.454 kb on + strandat 730.454 kb on + strandat 730.454 kb on + strandat 730.454 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
remove
729,546 + -0.2
729,546 + -0.8
729,549 + -1.1
729,549 + -1.1
729,549 + -0.5
730,413 + -0.4
730,454 + -0.4
730,454 + -1.0
730,454 + -0.1
730,454 + -1.4
730,454 + -0.6

Or see this region's nucleotide sequence