Strain Fitness in Methylophilus sp. DMC18 around GFF552

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF550 and GFF551 are separated by 23 nucleotidesGFF551 and GFF552 are separated by 18 nucleotidesGFF552 and GFF553 are separated by 108 nucleotides GFF550 - Flagellar biosynthetic protein FliP, at 606,636 to 607,430 GFF550 GFF551 - Flagellar biosynthetic protein FliQ, at 607,454 to 607,723 GFF551 GFF552 - Flagellar biosynthetic protein FliR, at 607,742 to 608,509 GFF552 GFF553 - Flagellar hook-associated protein 3, at 608,618 to 609,523 GFF553 Position (kb) 607 608 609Strain fitness (log2 ratio) -2 -1 0 1at 606.804 kb on + strand, within GFF550at 606.805 kb on - strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.806 kb on + strand, within GFF550at 606.807 kb on - strand, within GFF550at 606.807 kb on - strand, within GFF550at 606.885 kb on - strand, within GFF550at 606.885 kb on - strand, within GFF550at 606.913 kb on + strand, within GFF550at 606.955 kb on + strand, within GFF550at 606.956 kb on - strand, within GFF550at 606.956 kb on - strand, within GFF550at 606.962 kb on - strand, within GFF550at 606.962 kb on - strand, within GFF550at 606.977 kb on + strand, within GFF550at 607.017 kb on + strand, within GFF550at 607.017 kb on + strand, within GFF550at 607.018 kb on - strand, within GFF550at 607.018 kb on - strand, within GFF550at 607.030 kb on - strand, within GFF550at 607.030 kb on - strand, within GFF550at 607.095 kb on - strand, within GFF550at 607.157 kb on + strand, within GFF550at 607.172 kb on + strand, within GFF550at 607.172 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.260 kb on + strand, within GFF550at 607.261 kb on - strand, within GFF550at 607.261 kb on - strand, within GFF550at 607.261 kb on - strand, within GFF550at 607.261 kb on - strand, within GFF550at 607.263 kb on - strand, within GFF550at 607.283 kb on + strand, within GFF550at 607.284 kb on - strand, within GFF550at 607.449 kb on - strandat 607.453 kb on + strandat 607.453 kb on + strandat 607.453 kb on + strandat 607.453 kb on + strandat 607.453 kb on + strandat 607.561 kb on + strand, within GFF551at 607.606 kb on + strand, within GFF551at 607.679 kb on + strand, within GFF551at 607.679 kb on + strand, within GFF551at 607.690 kb on + strand, within GFF551at 607.691 kb on - strand, within GFF551at 607.782 kb on + strandat 607.783 kb on - strandat 607.807 kb on + strandat 607.808 kb on - strandat 607.808 kb on - strandat 607.841 kb on - strand, within GFF552at 607.867 kb on + strand, within GFF552at 607.867 kb on + strand, within GFF552at 607.868 kb on - strand, within GFF552at 607.892 kb on - strand, within GFF552at 607.924 kb on + strand, within GFF552at 607.924 kb on + strand, within GFF552at 607.925 kb on - strand, within GFF552at 607.925 kb on - strand, within GFF552at 607.928 kb on - strand, within GFF552at 607.962 kb on + strand, within GFF552at 608.041 kb on + strand, within GFF552at 608.082 kb on - strand, within GFF552at 608.082 kb on - strand, within GFF552at 608.082 kb on - strand, within GFF552at 608.142 kb on + strand, within GFF552at 608.152 kb on + strand, within GFF552at 608.152 kb on + strand, within GFF552at 608.153 kb on - strand, within GFF552at 608.153 kb on - strand, within GFF552at 608.242 kb on + strand, within GFF552at 608.273 kb on - strand, within GFF552at 608.273 kb on - strand, within GFF552at 608.327 kb on - strand, within GFF552at 608.350 kb on - strand, within GFF552at 608.416 kb on + strand, within GFF552at 608.416 kb on + strand, within GFF552at 608.416 kb on + strand, within GFF552at 608.436 kb on + strandat 608.436 kb on + strandat 608.436 kb on + strandat 608.437 kb on - strandat 608.437 kb on - strandat 608.437 kb on - strandat 608.437 kb on - strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.486 kb on + strandat 608.487 kb on - strandat 608.487 kb on - strandat 608.487 kb on - strandat 608.487 kb on - strandat 608.536 kb on - strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.541 kb on + strandat 608.542 kb on - strandat 608.645 kb on - strandat 608.686 kb on + strandat 608.686 kb on + strandat 608.721 kb on + strand, within GFF553at 608.721 kb on + strand, within GFF553at 608.722 kb on - strand, within GFF553at 608.747 kb on + strand, within GFF553at 608.747 kb on + strand, within GFF553at 608.748 kb on - strand, within GFF553at 608.748 kb on - strand, within GFF553at 608.752 kb on + strand, within GFF553at 608.753 kb on - strand, within GFF553at 608.753 kb on - strand, within GFF553at 608.758 kb on - strand, within GFF553at 608.768 kb on + strand, within GFF553at 608.768 kb on + strand, within GFF553at 608.768 kb on + strand, within GFF553at 608.768 kb on + strand, within GFF553at 608.769 kb on - strand, within GFF553at 608.769 kb on - strand, within GFF553at 608.770 kb on + strand, within GFF553at 608.770 kb on + strand, within GFF553at 608.770 kb on + strand, within GFF553at 608.770 kb on + strand, within GFF553at 608.770 kb on + strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.771 kb on - strand, within GFF553at 608.833 kb on + strand, within GFF553at 608.930 kb on - strand, within GFF553at 608.930 kb on - strand, within GFF553at 608.941 kb on + strand, within GFF553at 608.941 kb on + strand, within GFF553at 608.942 kb on - strand, within GFF553at 608.942 kb on - strand, within GFF553at 608.942 kb on - strand, within GFF553at 608.942 kb on - strand, within GFF553at 608.972 kb on - strand, within GFF553at 608.972 kb on - strand, within GFF553at 608.995 kb on + strand, within GFF553at 608.995 kb on + strand, within GFF553at 609.097 kb on + strand, within GFF553at 609.097 kb on + strand, within GFF553at 609.097 kb on + strand, within GFF553at 609.098 kb on - strand, within GFF553at 609.106 kb on + strand, within GFF553at 609.117 kb on + strand, within GFF553at 609.118 kb on - strand, within GFF553at 609.118 kb on - strand, within GFF553at 609.122 kb on - strand, within GFF553at 609.128 kb on - strand, within GFF553at 609.197 kb on - strand, within GFF553at 609.197 kb on - strand, within GFF553at 609.219 kb on + strand, within GFF553at 609.219 kb on + strand, within GFF553at 609.220 kb on - strand, within GFF553at 609.220 kb on - strand, within GFF553at 609.285 kb on - strand, within GFF553at 609.362 kb on - strand, within GFF553at 609.467 kb on + strandat 609.498 kb on + strandat 609.499 kb on - strandat 609.499 kb on - strandat 609.499 kb on - strandat 609.505 kb on + strandat 609.505 kb on + strandat 609.506 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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606,804 + GFF550 0.21 -0.1
606,805 - GFF550 0.21 +0.3
606,806 + GFF550 0.21 -0.2
606,806 + GFF550 0.21 -0.7
606,806 + GFF550 0.21 -0.5
606,806 + GFF550 0.21 -0.9
606,806 + GFF550 0.21 +0.1
606,806 + GFF550 0.21 -1.5
606,806 + GFF550 0.21 -0.6
606,806 + GFF550 0.21 -0.0
606,806 + GFF550 0.21 -0.2
606,807 - GFF550 0.22 -0.9
606,807 - GFF550 0.22 -0.3
606,885 - GFF550 0.31 +0.9
606,885 - GFF550 0.31 +0.6
606,913 + GFF550 0.35 +0.9
606,955 + GFF550 0.40 -2.2
606,956 - GFF550 0.40 +0.3
606,956 - GFF550 0.40 -0.9
606,962 - GFF550 0.41 -0.1
606,962 - GFF550 0.41 -0.1
606,977 + GFF550 0.43 +0.6
607,017 + GFF550 0.48 -0.4
607,017 + GFF550 0.48 +1.4
607,018 - GFF550 0.48 -2.7
607,018 - GFF550 0.48 -0.1
607,030 - GFF550 0.50 -0.5
607,030 - GFF550 0.50 -1.7
607,095 - GFF550 0.58 +1.3
607,157 + GFF550 0.66 +0.8
607,172 + GFF550 0.67 -0.4
607,172 + GFF550 0.67 -0.9
607,260 + GFF550 0.78 -1.0
607,260 + GFF550 0.78 +0.5
607,260 + GFF550 0.78 -0.1
607,260 + GFF550 0.78 -0.2
607,260 + GFF550 0.78 -0.3
607,260 + GFF550 0.78 +0.3
607,260 + GFF550 0.78 +0.3
607,260 + GFF550 0.78 +0.4
607,260 + GFF550 0.78 -1.4
607,261 - GFF550 0.79 +1.1
607,261 - GFF550 0.79 -1.3
607,261 - GFF550 0.79 -1.7
607,261 - GFF550 0.79 -0.1
607,263 - GFF550 0.79 +0.3
607,283 + GFF550 0.81 -0.2
607,284 - GFF550 0.82 -0.4
607,449 - -0.2
607,453 + -0.3
607,453 + -1.4
607,453 + -0.3
607,453 + -0.4
607,453 + -0.4
607,561 + GFF551 0.40 +0.1
607,606 + GFF551 0.56 -0.5
607,679 + GFF551 0.83 -2.0
607,679 + GFF551 0.83 -0.1
607,690 + GFF551 0.87 +0.7
607,691 - GFF551 0.88 -1.3
607,782 + -0.4
607,783 - -1.1
607,807 + -0.3
607,808 - +0.2
607,808 - -0.2
607,841 - GFF552 0.13 -0.7
607,867 + GFF552 0.16 +0.2
607,867 + GFF552 0.16 -0.1
607,868 - GFF552 0.16 -0.1
607,892 - GFF552 0.20 -0.4
607,924 + GFF552 0.24 -1.7
607,924 + GFF552 0.24 -0.4
607,925 - GFF552 0.24 -0.1
607,925 - GFF552 0.24 +0.5
607,928 - GFF552 0.24 -0.3
607,962 + GFF552 0.29 -1.1
608,041 + GFF552 0.39 -0.2
608,082 - GFF552 0.44 +0.7
608,082 - GFF552 0.44 -0.5
608,082 - GFF552 0.44 +0.2
608,142 + GFF552 0.52 -1.4
608,152 + GFF552 0.53 +0.4
608,152 + GFF552 0.53 -0.1
608,153 - GFF552 0.54 -0.7
608,153 - GFF552 0.54 -1.4
608,242 + GFF552 0.65 +0.1
608,273 - GFF552 0.69 +1.2
608,273 - GFF552 0.69 -1.4
608,327 - GFF552 0.76 -0.1
608,350 - GFF552 0.79 -2.7
608,416 + GFF552 0.88 -1.4
608,416 + GFF552 0.88 +0.5
608,416 + GFF552 0.88 -0.5
608,436 + -0.8
608,436 + -0.1
608,436 + -0.7
608,437 - -0.3
608,437 - -1.2
608,437 - -0.1
608,437 - +0.1
608,486 + -1.6
608,486 + -0.4
608,486 + -0.8
608,486 + -1.1
608,486 + +0.4
608,486 + -1.1
608,486 + -0.1
608,486 + -0.3
608,487 - -1.9
608,487 - -1.6
608,487 - -1.9
608,487 - +1.1
608,536 - -1.1
608,541 + +0.3
608,541 + -1.1
608,541 + -0.8
608,541 + +0.6
608,541 + -2.4
608,542 - -0.7
608,645 - -2.1
608,686 + +0.9
608,686 + +0.1
608,721 + GFF553 0.11 -0.5
608,721 + GFF553 0.11 -0.4
608,722 - GFF553 0.11 +0.6
608,747 + GFF553 0.14 -0.3
608,747 + GFF553 0.14 -0.7
608,748 - GFF553 0.14 -0.3
608,748 - GFF553 0.14 +0.1
608,752 + GFF553 0.15 +0.0
608,753 - GFF553 0.15 -0.2
608,753 - GFF553 0.15 -1.9
608,758 - GFF553 0.15 -0.7
608,768 + GFF553 0.17 -0.9
608,768 + GFF553 0.17 +0.9
608,768 + GFF553 0.17 -0.5
608,768 + GFF553 0.17 -1.1
608,769 - GFF553 0.17 +0.6
608,769 - GFF553 0.17 -0.0
608,770 + GFF553 0.17 -0.2
608,770 + GFF553 0.17 -1.1
608,770 + GFF553 0.17 -0.5
608,770 + GFF553 0.17 -0.9
608,770 + GFF553 0.17 -0.1
608,771 - GFF553 0.17 +0.8
608,771 - GFF553 0.17 -0.1
608,771 - GFF553 0.17 -0.1
608,771 - GFF553 0.17 -0.2
608,771 - GFF553 0.17 -0.4
608,771 - GFF553 0.17 +1.3
608,771 - GFF553 0.17 -0.1
608,771 - GFF553 0.17 -0.2
608,771 - GFF553 0.17 +0.0
608,771 - GFF553 0.17 -0.3
608,833 + GFF553 0.24 +0.2
608,930 - GFF553 0.34 +0.1
608,930 - GFF553 0.34 -2.5
608,941 + GFF553 0.36 -1.9
608,941 + GFF553 0.36 -1.1
608,942 - GFF553 0.36 +0.1
608,942 - GFF553 0.36 -0.0
608,942 - GFF553 0.36 -1.1
608,942 - GFF553 0.36 -1.1
608,972 - GFF553 0.39 -1.9
608,972 - GFF553 0.39 +1.0
608,995 + GFF553 0.42 +0.9
608,995 + GFF553 0.42 -0.7
609,097 + GFF553 0.53 -0.4
609,097 + GFF553 0.53 +0.1
609,097 + GFF553 0.53 +0.7
609,098 - GFF553 0.53 -1.1
609,106 + GFF553 0.54 +0.4
609,117 + GFF553 0.55 -0.3
609,118 - GFF553 0.55 +0.4
609,118 - GFF553 0.55 +0.8
609,122 - GFF553 0.56 -0.3
609,128 - GFF553 0.56 +0.2
609,197 - GFF553 0.64 +0.3
609,197 - GFF553 0.64 -1.4
609,219 + GFF553 0.66 +0.3
609,219 + GFF553 0.66 -0.7
609,220 - GFF553 0.66 +0.8
609,220 - GFF553 0.66 +0.1
609,285 - GFF553 0.74 -1.4
609,362 - GFF553 0.82 -1.4
609,467 + -0.3
609,498 + +0.6
609,499 - -0.2
609,499 - +0.5
609,499 - -0.7
609,505 + -1.2
609,505 + -0.3
609,506 - -1.2

Or see this region's nucleotide sequence