Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF432 and GFF433 are separated by 26 nucleotides GFF433 and GFF434 are separated by 27 nucleotides GFF434 and GFF435 are separated by 152 nucleotides
GFF432 - Cysteine desulfurase IscS, at 473,054 to 474,271
GFF432
GFF433 - Cysteine desulfurase NifS, at 474,298 to 475,443
GFF433
GFF434 - HTH-type transcriptional regulator IscR, at 475,471 to 475,941
GFF434
GFF435 - Serine acetyltransferase, at 476,094 to 476,828
GFF435
Position (kb) 474
475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 474.291 kb on - strand at 474.296 kb on - strand at 474.296 kb on - strand at 474.296 kb on - strand at 474.296 kb on - strand at 474.296 kb on - strand at 474.296 kb on - strand at 474.296 kb on - strand at 474.300 kb on - strand at 474.317 kb on - strand at 474.317 kb on - strand at 475.553 kb on - strand, within GFF434 at 475.553 kb on - strand, within GFF434 at 475.584 kb on - strand, within GFF434 at 475.604 kb on - strand, within GFF434 at 475.616 kb on - strand, within GFF434 at 475.694 kb on - strand, within GFF434 at 476.002 kb on - strand at 476.002 kb on - strand at 476.002 kb on - strand at 476.002 kb on - strand at 476.004 kb on + strand at 476.004 kb on + strand at 476.005 kb on - strand at 476.031 kb on - strand at 476.038 kb on + strand at 476.038 kb on + strand at 476.038 kb on + strand at 476.038 kb on + strand at 476.038 kb on + strand at 476.039 kb on - strand at 476.039 kb on - strand at 476.039 kb on - strand at 476.095 kb on + strand at 476.267 kb on - strand, within GFF435 at 476.331 kb on - strand, within GFF435
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 474,291 - -0.8 474,296 - -1.4 474,296 - -0.1 474,296 - +0.9 474,296 - -0.6 474,296 - -2.5 474,296 - +0.1 474,296 - -2.0 474,300 - -0.1 474,317 - -1.9 474,317 - -0.3 475,553 - GFF434 0.17 -0.7 475,553 - GFF434 0.17 +0.2 475,584 - GFF434 0.24 -2.1 475,604 - GFF434 0.28 +0.2 475,616 - GFF434 0.31 -0.1 475,694 - GFF434 0.47 -0.8 476,002 - -1.2 476,002 - -0.6 476,002 - +0.9 476,002 - -0.9 476,004 + -0.7 476,004 + -1.4 476,005 - -2.6 476,031 - -1.1 476,038 + -3.1 476,038 + -0.9 476,038 + -1.6 476,038 + -0.9 476,038 + +1.7 476,039 - -0.7 476,039 - -1.0 476,039 - -0.0 476,095 + -0.2 476,267 - GFF435 0.24 -1.4 476,331 - GFF435 0.32 -1.1
Or see this region's nucleotide sequence