Strain Fitness in Methylophilus sp. DMC18 around GFF2386

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
80,684	+		GFF2385	0.33	-0.8
80,684	+		GFF2385	0.33	-0.1
80,684	+		GFF2385	0.33	+0.2
80,708	+		GFF2385	0.34	+0.6
80,708	+		GFF2385	0.34	-0.9
80,719	-		GFF2385	0.35	-0.2
80,864	+		GFF2385	0.45	-0.7
80,865	-		GFF2385	0.45	-2.1
80,865	-		GFF2385	0.45	+0.2
80,865	-		GFF2385	0.45	-1.0
80,865	-		GFF2385	0.45	+1.8
80,865	-		GFF2385	0.45	-1.0
80,865	-		GFF2385	0.45	-0.5
80,865	-		GFF2385	0.45	-0.9
80,865	-		GFF2385	0.45	-0.8
80,868	+		GFF2385	0.45	-1.3
80,868	+		GFF2385	0.45	-0.7
80,868	+		GFF2385	0.45	-0.2
80,868	+		GFF2385	0.45	-0.6
80,924	+		GFF2385	0.49	+0.0
80,936	+		GFF2385	0.50	-1.0
81,006	+		GFF2385	0.54	+0.0
81,014	+		GFF2385	0.55	+1.0
81,015	-		GFF2385	0.55	+0.0
81,015	-		GFF2385	0.55	-0.5
81,232	+		GFF2385	0.70	-0.9
81,318	-		GFF2385	0.76	-0.2
81,327	+		GFF2385	0.76	-0.9
81,327	+		GFF2385	0.76	-0.4
81,342	+		GFF2385	0.77	-1.3
81,342	+		GFF2385	0.77	-1.0
81,343	-		GFF2385	0.77	-0.4
81,343	-		GFF2385	0.77	-1.1
81,405	-		GFF2385	0.81	+0.2
81,405	-		GFF2385	0.81	-1.0
81,405	-		GFF2385	0.81	-0.1
81,405	-		GFF2385	0.81	+0.0
81,405	-		GFF2385	0.81	-0.0
81,544	+				-0.8
81,658	+				+0.6
81,658	+				+0.0
81,659	-				-1.4
81,679	-				-0.6
81,694	+				-1.0
81,769	+				-1.6
81,770	-				-0.7
81,796	+				+0.6
81,797	-				-2.0
81,909	+		GFF2386	0.19	+0.2
81,909	+		GFF2386	0.19	+0.5
81,910	-		GFF2386	0.19	-0.3
81,910	-		GFF2386	0.19	-1.0
81,982	+		GFF2386	0.25	+0.3
81,983	-		GFF2386	0.25	-0.4
82,011	-		GFF2386	0.27	-0.5
82,026	-		GFF2386	0.28	+0.0
82,027	+		GFF2386	0.28	-0.6
82,027	+		GFF2386	0.28	+0.3
82,028	-		GFF2386	0.28	-0.1
82,028	-		GFF2386	0.28	+0.1
82,028	-		GFF2386	0.28	-0.8
82,028	-		GFF2386	0.28	+0.6
82,028	-		GFF2386	0.28	-0.5
82,076	+		GFF2386	0.32	-0.1
82,085	-		GFF2386	0.33	-1.8
82,085	-		GFF2386	0.33	-1.5
82,095	+		GFF2386	0.34	+0.0
82,095	+		GFF2386	0.34	-0.8
82,096	-		GFF2386	0.34	-2.4
82,108	+		GFF2386	0.35	-0.8
82,108	+		GFF2386	0.35	-1.4
82,109	-		GFF2386	0.35	-0.3
82,109	-		GFF2386	0.35	-0.8
82,109	-		GFF2386	0.35	-1.3
82,109	-		GFF2386	0.35	+0.0
82,180	+		GFF2386	0.41	+0.5
82,181	-		GFF2386	0.41	-0.2
82,237	-		GFF2386	0.46	+0.3
82,283	+		GFF2386	0.49	-1.5
82,283	+		GFF2386	0.49	-1.8
82,283	+		GFF2386	0.49	-1.4
82,283	+		GFF2386	0.49	+0.8
82,284	-		GFF2386	0.49	+0.6
82,284	-		GFF2386	0.49	-0.2
82,284	-		GFF2386	0.49	-2.3
82,284	-		GFF2386	0.49	-1.0
82,284	-		GFF2386	0.49	-1.3
82,284	-		GFF2386	0.49	-0.8
82,284	-		GFF2386	0.49	-0.6
82,294	-		GFF2386	0.50	+0.9
82,310	+		GFF2386	0.51	-2.1
82,351	+		GFF2386	0.55	-1.5
82,352	-		GFF2386	0.55	-1.3
82,552	+		GFF2386	0.71	-0.6
82,552	+		GFF2386	0.71	+0.6
82,552	+		GFF2386	0.71	-0.1
82,552	+		GFF2386	0.71	-0.2
82,559	-		GFF2386	0.72	+1.5
82,592	+		GFF2386	0.75	-0.2
82,703	+		GFF2386	0.84	-0.4
82,703	+		GFF2386	0.84	+0.7
82,704	-		GFF2386	0.84	-0.5
82,704	-		GFF2386	0.84	-1.8
82,762	-		GFF2386	0.88	-1.1
82,762	-		GFF2386	0.88	-2.0
82,762	-		GFF2386	0.88	-0.3
82,813	-				-1.1
82,813	-				-0.8
82,813	-				-1.0
82,813	-				+0.3
82,815	+				-0.8
82,825	+				+0.9
82,825	+				+1.0
82,826	-				+1.4
82,830	+				-0.3
82,830	+				-1.0
82,844	-				-0.2
82,844	-				-1.0
82,879	-				-1.8
82,879	-				-0.8
82,901	+				-2.4
82,901	+				-1.6
82,914	+				-1.0
82,914	+				+0.2
82,914	+				+0.2
82,914	+				-0.5
82,914	+				-1.3
82,914	+				+0.3
82,914	+				+0.6
82,915	-				+0.0
82,915	-				+0.6
82,915	-				-1.3
82,915	-				-0.2
82,915	-				+1.0
82,915	-				-1.1
82,915	-				+1.6
82,915	-				-0.8
82,915	-				-0.1
82,915	-				+1.0
82,915	-				+0.5
82,918	+				-0.5
82,918	+				-0.2
82,918	+				-0.8
82,918	+				-1.3
82,918	+				+0.0
82,918	+				-0.4
82,919	-				-1.3
82,919	-				-0.1
82,919	-				+0.1
82,919	-				-1.3
82,919	-				-0.1
82,919	-				-0.1
82,919	-				-0.1
82,919	-				+0.0
82,919	-				+1.3
82,919	-				+0.3
82,927	+				-0.2
82,927	+				-0.1
82,927	+				-1.7
82,927	+				-0.4
82,928	-				-1.0
82,928	-				-0.4
82,928	-				-1.2
82,928	-				-1.1
82,928	-				+0.5
82,928	-				-1.5
82,928	-				-1.0
82,928	-				-0.7
82,928	-				-2.0
82,928	-				-3.0
82,965	-				-0.8
82,965	-				+0.4
82,972	-				-0.2
82,972	-				-0.2
82,984	+				-1.3
83,017	+				-1.0
83,022	+				-0.8
83,022	+				-1.0
83,022	+				-0.5
83,023	-				-2.4
83,023	-				-1.4
83,047	+				+0.6
83,047	+				-1.5
83,048	-				-0.5
83,048	-				-1.4
83,058	+				-1.8
83,067	+		GFF2387	0.10	+0.5
83,067	+		GFF2387	0.10	-1.0
83,068	-		GFF2387	0.10	-0.2
83,068	-		GFF2387	0.10	-0.5
83,071	+		GFF2387	0.11	-1.3
83,072	-		GFF2387	0.11	-0.5
83,072	-		GFF2387	0.11	-1.0
83,072	-		GFF2387	0.11	-1.8
83,091	+		GFF2387	0.15	-1.1
83,204	+		GFF2387	0.35	+0.0
83,204	+		GFF2387	0.35	-0.9
83,204	+		GFF2387	0.35	+0.8
83,205	-		GFF2387	0.36	-1.3
83,205	-		GFF2387	0.36	-0.5
83,205	-		GFF2387	0.36	-0.8
83,205	-		GFF2387	0.36	-0.0
83,205	-		GFF2387	0.36	-1.0
83,259	+		GFF2387	0.45	-1.4
83,267	-		GFF2387	0.47	-1.1
83,340	+		GFF2387	0.60	+1.0
83,340	+		GFF2387	0.60	-1.3
83,340	+		GFF2387	0.60	-0.3
83,340	+		GFF2387	0.60	+1.0
83,340	+		GFF2387	0.60	-1.7
83,340	+		GFF2387	0.60	-1.8
83,341	-		GFF2387	0.61	-1.7
83,341	-		GFF2387	0.61	+0.0
83,341	-		GFF2387	0.61	-1.4
83,341	-		GFF2387	0.61	-0.4
83,341	-		GFF2387	0.61	+0.2
83,341	-		GFF2387	0.61	-0.1
83,341	-		GFF2387	0.61	-0.5
83,341	-		GFF2387	0.61	-1.0
83,371	+		GFF2387	0.66	+0.7
83,371	+		GFF2387	0.66	-0.0
83,372	-		GFF2387	0.66	-0.5
83,374	+		GFF2387	0.67	+0.0
83,375	-		GFF2387	0.67	-1.8
83,375	-		GFF2387	0.67	-0.3
83,375	-		GFF2387	0.67	-1.1
83,377	+		GFF2387	0.67	-1.1
83,377	+		GFF2387	0.67	-0.3
83,377	+		GFF2387	0.67	+0.8
83,384	+		GFF2387	0.69	-0.4
83,384	+		GFF2387	0.69	-0.9
83,385	-		GFF2387	0.69	+0.3
83,410	+		GFF2387	0.73	-1.5
83,411	-		GFF2387	0.73	-0.3
83,411	-		GFF2387	0.73	-0.1
83,428	+		GFF2387	0.77	-1.2
83,453	+		GFF2387	0.81	-0.3
83,453	+		GFF2387	0.81	-2.0
83,453	+		GFF2387	0.81	-1.2
83,453	+		GFF2387	0.81	-1.5
83,454	-		GFF2387	0.81	+0.5
83,454	-		GFF2387	0.81	-0.4
83,454	-		GFF2387	0.81	-0.3
83,454	-		GFF2387	0.81	+0.5
83,454	-		GFF2387	0.81	-0.5
83,454	-		GFF2387	0.81	-0.9
83,484	-		GFF2387	0.87	+0.7
83,497	+		GFF2387	0.89	-2.5
83,503	+				-0.3
83,504	-				+0.5
83,552	+				+0.1
83,552	+				-0.0
83,553	-				+0.3
83,553	-				-0.8
83,576	-				+0.2
83,600	+				-1.0
83,600	+				+0.2
83,600	+				+0.0
83,601	-				-0.3
83,601	-				-0.8
83,602	+				+0.0
83,603	-				-0.1
83,608	+				+0.2
83,609	-				-1.1
83,674	+				+0.6
83,675	-				-0.4
83,675	-				-1.3
83,703	-				-0.7
83,758	+				+0.0
83,758	+				+0.0
83,758	+				-0.5
83,759	-				-1.0
83,759	-				+0.0
83,776	+				-1.2
83,793	+				+0.0
83,793	+				-0.3
83,793	+				-2.3
83,897	-				-1.5