Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2191 and GFF2192 are separated by 159 nucleotides GFF2192 and GFF2193 are separated by 110 nucleotides GFF2193 and GFF2194 are separated by 235 nucleotides
GFF2191 - Phosphomethylpyrimidine synthase, at 240,200 to 242,080
GFF2191
GFF2192 - hypothetical protein, at 242,240 to 243,895
GFF2192
GFF2193 - hypothetical protein, at 244,006 to 244,521
GFF2193
GFF2194 - hypothetical protein, at 244,757 to 245,020
GFF2194
Position (kb) 242
243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 241.246 kb on + strand, within GFF2191 at 241.246 kb on + strand, within GFF2191 at 241.247 kb on - strand, within GFF2191 at 241.247 kb on - strand, within GFF2191 at 241.276 kb on + strand, within GFF2191 at 241.276 kb on + strand, within GFF2191 at 241.277 kb on - strand, within GFF2191 at 241.292 kb on + strand, within GFF2191 at 241.292 kb on + strand, within GFF2191 at 241.293 kb on - strand, within GFF2191 at 241.294 kb on + strand, within GFF2191 at 241.295 kb on - strand, within GFF2191 at 241.331 kb on + strand, within GFF2191 at 241.332 kb on - strand, within GFF2191 at 241.332 kb on - strand, within GFF2191 at 241.375 kb on + strand, within GFF2191 at 241.376 kb on - strand, within GFF2191 at 241.379 kb on + strand, within GFF2191 at 241.379 kb on + strand, within GFF2191 at 241.379 kb on + strand, within GFF2191 at 241.379 kb on + strand, within GFF2191 at 241.379 kb on + strand, within GFF2191 at 241.379 kb on + strand, within GFF2191 at 241.380 kb on - strand, within GFF2191 at 241.380 kb on - strand, within GFF2191 at 241.380 kb on - strand, within GFF2191 at 241.380 kb on - strand, within GFF2191 at 241.380 kb on - strand, within GFF2191 at 241.492 kb on + strand, within GFF2191 at 241.492 kb on + strand, within GFF2191 at 241.492 kb on + strand, within GFF2191 at 241.493 kb on - strand, within GFF2191 at 241.493 kb on - strand, within GFF2191 at 241.592 kb on + strand, within GFF2191 at 241.593 kb on - strand, within GFF2191 at 241.603 kb on + strand, within GFF2191 at 241.603 kb on + strand, within GFF2191 at 241.603 kb on + strand, within GFF2191 at 241.603 kb on + strand, within GFF2191 at 241.604 kb on - strand, within GFF2191 at 241.604 kb on - strand, within GFF2191 at 241.637 kb on + strand, within GFF2191 at 241.658 kb on + strand, within GFF2191 at 241.659 kb on - strand, within GFF2191 at 241.659 kb on - strand, within GFF2191 at 241.659 kb on - strand, within GFF2191 at 241.659 kb on - strand, within GFF2191 at 241.720 kb on + strand, within GFF2191 at 241.720 kb on + strand, within GFF2191 at 241.721 kb on - strand, within GFF2191 at 241.725 kb on - strand, within GFF2191 at 241.835 kb on - strand, within GFF2191 at 241.981 kb on + strand at 242.094 kb on + strand at 242.094 kb on + strand at 242.094 kb on + strand at 242.095 kb on - strand at 242.095 kb on - strand at 242.095 kb on - strand at 242.095 kb on - strand at 242.095 kb on - strand at 242.151 kb on + strand at 242.152 kb on - strand at 242.204 kb on + strand at 242.204 kb on + strand at 242.205 kb on - strand at 242.205 kb on - strand at 242.263 kb on + strand at 242.264 kb on - strand at 242.264 kb on - strand at 242.338 kb on - strand at 242.424 kb on + strand, within GFF2192 at 242.424 kb on + strand, within GFF2192 at 242.424 kb on + strand, within GFF2192 at 242.425 kb on - strand, within GFF2192 at 242.425 kb on - strand, within GFF2192 at 242.425 kb on - strand, within GFF2192 at 242.425 kb on - strand, within GFF2192 at 242.425 kb on - strand, within GFF2192 at 242.458 kb on + strand, within GFF2192 at 242.459 kb on - strand, within GFF2192 at 242.459 kb on - strand, within GFF2192 at 242.602 kb on + strand, within GFF2192 at 242.603 kb on - strand, within GFF2192 at 242.628 kb on + strand, within GFF2192 at 242.628 kb on + strand, within GFF2192 at 242.629 kb on - strand, within GFF2192 at 242.629 kb on - strand, within GFF2192 at 242.630 kb on + strand, within GFF2192 at 242.631 kb on - strand, within GFF2192 at 242.631 kb on - strand, within GFF2192 at 242.644 kb on + strand, within GFF2192 at 242.717 kb on + strand, within GFF2192 at 242.930 kb on + strand, within GFF2192 at 242.931 kb on - strand, within GFF2192 at 242.931 kb on - strand, within GFF2192 at 242.972 kb on + strand, within GFF2192 at 242.996 kb on + strand, within GFF2192 at 242.996 kb on + strand, within GFF2192 at 242.996 kb on + strand, within GFF2192 at 242.997 kb on - strand, within GFF2192 at 243.019 kb on + strand, within GFF2192 at 243.019 kb on + strand, within GFF2192 at 243.019 kb on + strand, within GFF2192 at 243.019 kb on + strand, within GFF2192 at 243.019 kb on + strand, within GFF2192 at 243.020 kb on - strand, within GFF2192 at 243.079 kb on + strand, within GFF2192 at 243.079 kb on + strand, within GFF2192 at 243.079 kb on + strand, within GFF2192 at 243.080 kb on - strand, within GFF2192 at 243.091 kb on + strand, within GFF2192 at 243.131 kb on + strand, within GFF2192 at 243.131 kb on + strand, within GFF2192 at 243.132 kb on - strand, within GFF2192 at 243.183 kb on + strand, within GFF2192 at 243.191 kb on - strand, within GFF2192 at 243.191 kb on - strand, within GFF2192 at 243.281 kb on + strand, within GFF2192 at 243.282 kb on - strand, within GFF2192 at 243.289 kb on - strand, within GFF2192 at 243.370 kb on + strand, within GFF2192 at 243.371 kb on - strand, within GFF2192 at 243.560 kb on - strand, within GFF2192 at 243.576 kb on - strand, within GFF2192 at 243.576 kb on - strand, within GFF2192 at 243.638 kb on - strand, within GFF2192 at 243.688 kb on - strand, within GFF2192 at 243.728 kb on + strand, within GFF2192 at 243.764 kb on - strand at 243.764 kb on - strand at 243.770 kb on + strand at 243.773 kb on - strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.842 kb on + strand at 243.845 kb on - strand at 243.849 kb on + strand at 243.849 kb on + strand at 243.868 kb on - strand at 243.868 kb on - strand at 243.928 kb on - strand at 243.964 kb on + strand at 243.974 kb on + strand at 243.974 kb on + strand at 243.974 kb on + strand at 243.974 kb on + strand at 243.974 kb on + strand at 243.975 kb on - strand at 243.975 kb on - strand at 243.976 kb on + strand at 243.976 kb on + strand at 243.976 kb on + strand at 243.977 kb on - strand at 243.988 kb on + strand at 243.989 kb on - strand at 243.995 kb on - strand at 244.031 kb on + strand at 244.071 kb on - strand, within GFF2193 at 244.071 kb on - strand, within GFF2193 at 244.071 kb on - strand, within GFF2193 at 244.071 kb on - strand, within GFF2193 at 244.071 kb on - strand, within GFF2193 at 244.139 kb on + strand, within GFF2193 at 244.139 kb on + strand, within GFF2193 at 244.139 kb on + strand, within GFF2193 at 244.177 kb on + strand, within GFF2193 at 244.177 kb on + strand, within GFF2193 at 244.177 kb on + strand, within GFF2193 at 244.177 kb on + strand, within GFF2193 at 244.178 kb on - strand, within GFF2193 at 244.178 kb on - strand, within GFF2193 at 244.179 kb on + strand, within GFF2193 at 244.179 kb on + strand, within GFF2193 at 244.412 kb on + strand, within GFF2193 at 244.412 kb on + strand, within GFF2193 at 244.413 kb on - strand, within GFF2193 at 244.413 kb on - strand, within GFF2193 at 244.413 kb on - strand, within GFF2193 at 244.460 kb on + strand, within GFF2193 at 244.461 kb on - strand, within GFF2193 at 244.461 kb on - strand, within GFF2193 at 244.481 kb on - strand at 244.481 kb on - strand at 244.481 kb on - strand at 244.481 kb on - strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.525 kb on + strand at 244.526 kb on - strand at 244.526 kb on - strand at 244.526 kb on - strand at 244.526 kb on - strand at 244.526 kb on - strand at 244.526 kb on - strand at 244.526 kb on - strand at 244.529 kb on + strand at 244.529 kb on + strand at 244.530 kb on - strand at 244.530 kb on - strand at 244.530 kb on - strand at 244.587 kb on + strand at 244.588 kb on - strand at 244.604 kb on + strand at 244.604 kb on + strand at 244.604 kb on + strand at 244.604 kb on + strand at 244.605 kb on - strand at 244.605 kb on - strand at 244.605 kb on - strand at 244.605 kb on - strand at 244.609 kb on - strand at 244.628 kb on + strand at 244.629 kb on - strand at 244.644 kb on + strand at 244.644 kb on + strand at 244.645 kb on - strand at 244.645 kb on - strand at 244.645 kb on - strand at 244.711 kb on + strand at 244.711 kb on + strand at 244.712 kb on - strand at 244.712 kb on - strand at 244.712 kb on - strand at 244.735 kb on + strand at 244.741 kb on + strand at 244.741 kb on + strand at 244.741 kb on + strand at 244.742 kb on - strand at 244.763 kb on - strand at 244.768 kb on + strand at 244.783 kb on + strand at 244.783 kb on + strand at 244.858 kb on + strand, within GFF2194 at 244.858 kb on + strand, within GFF2194 at 244.859 kb on - strand, within GFF2194 at 244.872 kb on + strand, within GFF2194 at 244.887 kb on - strand, within GFF2194
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x remove 241,246 + GFF2191 0.56 -0.8 241,246 + GFF2191 0.56 -1.0 241,247 - GFF2191 0.56 -1.3 241,247 - GFF2191 0.56 -0.9 241,276 + GFF2191 0.57 -0.3 241,276 + GFF2191 0.57 +0.1 241,277 - GFF2191 0.57 -0.9 241,292 + GFF2191 0.58 +0.1 241,292 + GFF2191 0.58 +0.3 241,293 - GFF2191 0.58 +1.1 241,294 + GFF2191 0.58 -1.8 241,295 - GFF2191 0.58 +0.2 241,331 + GFF2191 0.60 -0.1 241,332 - GFF2191 0.60 -1.9 241,332 - GFF2191 0.60 +0.6 241,375 + GFF2191 0.62 -1.1 241,376 - GFF2191 0.63 -2.1 241,379 + GFF2191 0.63 -0.3 241,379 + GFF2191 0.63 +0.2 241,379 + GFF2191 0.63 -1.6 241,379 + GFF2191 0.63 -1.1 241,379 + GFF2191 0.63 +0.7 241,379 + GFF2191 0.63 +0.2 241,380 - GFF2191 0.63 -0.0 241,380 - GFF2191 0.63 -1.2 241,380 - GFF2191 0.63 +0.2 241,380 - GFF2191 0.63 -0.5 241,380 - GFF2191 0.63 +0.6 241,492 + GFF2191 0.69 -1.9 241,492 + GFF2191 0.69 -1.8 241,492 + GFF2191 0.69 -1.3 241,493 - GFF2191 0.69 -0.8 241,493 - GFF2191 0.69 +0.4 241,592 + GFF2191 0.74 -1.4 241,593 - GFF2191 0.74 -1.1 241,603 + GFF2191 0.75 -1.1 241,603 + GFF2191 0.75 -0.2 241,603 + GFF2191 0.75 +0.5 241,603 + GFF2191 0.75 +0.5 241,604 - GFF2191 0.75 -0.7 241,604 - GFF2191 0.75 -0.2 241,637 + GFF2191 0.76 +1.1 241,658 + GFF2191 0.78 -1.6 241,659 - GFF2191 0.78 -0.5 241,659 - GFF2191 0.78 -0.1 241,659 - GFF2191 0.78 -0.4 241,659 - GFF2191 0.78 -0.1 241,720 + GFF2191 0.81 -1.9 241,720 + GFF2191 0.81 -0.2 241,721 - GFF2191 0.81 +1.4 241,725 - GFF2191 0.81 -1.3 241,835 - GFF2191 0.87 -0.2 241,981 + -0.2 242,094 + -0.1 242,094 + -1.5 242,094 + -1.3 242,095 - -0.4 242,095 - -1.3 242,095 - -1.2 242,095 - -0.1 242,095 - +0.4 242,151 + +0.5 242,152 - -1.1 242,204 + -0.1 242,204 + +0.3 242,205 - -1.1 242,205 - +0.6 242,263 + -0.2 242,264 - +0.5 242,264 - -0.0 242,338 - -0.0 242,424 + GFF2192 0.11 -0.4 242,424 + GFF2192 0.11 -0.6 242,424 + GFF2192 0.11 -1.3 242,425 - GFF2192 0.11 -1.3 242,425 - GFF2192 0.11 +0.1 242,425 - GFF2192 0.11 -0.1 242,425 - GFF2192 0.11 -0.9 242,425 - GFF2192 0.11 -0.9 242,458 + GFF2192 0.13 -0.2 242,459 - GFF2192 0.13 +0.2 242,459 - GFF2192 0.13 -0.7 242,602 + GFF2192 0.22 -1.2 242,603 - GFF2192 0.22 -0.2 242,628 + GFF2192 0.23 +0.2 242,628 + GFF2192 0.23 -0.2 242,629 - GFF2192 0.23 +0.2 242,629 - GFF2192 0.23 -1.0 242,630 + GFF2192 0.24 -0.6 242,631 - GFF2192 0.24 +0.7 242,631 - GFF2192 0.24 -1.8 242,644 + GFF2192 0.24 -0.9 242,717 + GFF2192 0.29 -0.1 242,930 + GFF2192 0.42 -1.8 242,931 - GFF2192 0.42 -0.9 242,931 - GFF2192 0.42 -1.1 242,972 + GFF2192 0.44 -0.5 242,996 + GFF2192 0.46 +1.6 242,996 + GFF2192 0.46 +1.1 242,996 + GFF2192 0.46 +0.2 242,997 - GFF2192 0.46 -1.9 243,019 + GFF2192 0.47 +0.6 243,019 + GFF2192 0.47 +0.6 243,019 + GFF2192 0.47 -0.5 243,019 + GFF2192 0.47 -0.8 243,019 + GFF2192 0.47 -0.1 243,020 - GFF2192 0.47 -0.3 243,079 + GFF2192 0.51 -0.5 243,079 + GFF2192 0.51 +0.2 243,079 + GFF2192 0.51 +0.3 243,080 - GFF2192 0.51 +0.7 243,091 + GFF2192 0.51 +1.3 243,131 + GFF2192 0.54 -2.3 243,131 + GFF2192 0.54 -1.0 243,132 - GFF2192 0.54 -0.3 243,183 + GFF2192 0.57 +0.2 243,191 - GFF2192 0.57 -1.5 243,191 - GFF2192 0.57 +0.3 243,281 + GFF2192 0.63 +1.7 243,282 - GFF2192 0.63 -1.2 243,289 - GFF2192 0.63 -0.8 243,370 + GFF2192 0.68 -1.3 243,371 - GFF2192 0.68 -0.5 243,560 - GFF2192 0.80 -0.9 243,576 - GFF2192 0.81 -0.9 243,576 - GFF2192 0.81 -0.3 243,638 - GFF2192 0.84 +0.8 243,688 - GFF2192 0.87 +1.3 243,728 + GFF2192 0.90 +0.1 243,764 - +0.6 243,764 - -0.8 243,770 + -1.0 243,773 - +0.8 243,821 - -0.4 243,821 - -0.2 243,842 + -1.5 243,845 - -0.5 243,849 + +0.3 243,849 + -0.8 243,868 - +0.2 243,868 - -0.0 243,928 - -0.1 243,964 + -1.9 243,974 + +0.1 243,974 + -1.8 243,974 + -0.4 243,974 + -0.1 243,974 + -1.8 243,975 - -0.7 243,975 - -1.3 243,976 + -1.3 243,976 + +0.2 243,976 + +0.1 243,977 - -1.3 243,988 + -0.5 243,989 - -0.5 243,995 - -1.3 244,031 + -0.5 244,071 - GFF2193 0.13 -0.3 244,071 - GFF2193 0.13 +0.6 244,071 - GFF2193 0.13 -0.3 244,071 - GFF2193 0.13 +0.2 244,071 - GFF2193 0.13 -3.1 244,139 + GFF2193 0.26 -0.9 244,139 + GFF2193 0.26 +0.6 244,139 + GFF2193 0.26 -0.2 244,177 + GFF2193 0.33 -0.4 244,177 + GFF2193 0.33 -0.5 244,177 + GFF2193 0.33 +0.1 244,177 + GFF2193 0.33 -0.8 244,178 - GFF2193 0.33 +0.5 244,178 - GFF2193 0.33 -1.1 244,179 + GFF2193 0.34 -0.1 244,179 + GFF2193 0.34 -0.8 244,412 + GFF2193 0.79 -0.4 244,412 + GFF2193 0.79 +0.1 244,413 - GFF2193 0.79 -1.5 244,413 - GFF2193 0.79 -0.9 244,413 - GFF2193 0.79 -1.8 244,460 + GFF2193 0.88 +0.3 244,461 - GFF2193 0.88 -0.5 244,461 - GFF2193 0.88 -0.1 244,481 - -0.8 244,481 - +1.1 244,481 - -1.3 244,481 - -0.1 244,525 + -0.7 244,525 + +0.6 244,525 + +0.5 244,525 + -0.8 244,525 + +0.4 244,525 + -0.9 244,525 + -1.4 244,525 + -1.0 244,526 - -0.9 244,526 - +0.1 244,526 - -0.9 244,526 - +0.6 244,526 - -1.8 244,526 - +0.0 244,526 - -1.5 244,529 + +0.5 244,529 + -0.5 244,530 - -1.3 244,530 - +1.1 244,530 - +0.8 244,587 + -1.8 244,588 - -1.1 244,604 + +0.1 244,604 + -0.8 244,604 + -0.3 244,604 + -0.8 244,605 - -0.1 244,605 - +0.5 244,605 - -0.4 244,605 - +1.4 244,609 - -0.0 244,628 + -0.5 244,629 - -1.4 244,644 + +0.6 244,644 + +0.2 244,645 - -1.5 244,645 - -0.8 244,645 - -0.9 244,711 + -0.1 244,711 + +0.7 244,712 - +0.6 244,712 - -0.8 244,712 - -1.5 244,735 + +0.2 244,741 + +0.3 244,741 + -1.5 244,741 + -0.9 244,742 - -0.4 244,763 - -1.4 244,768 + +0.1 244,783 + +0.3 244,783 + -0.3 244,858 + GFF2194 0.38 -0.1 244,858 + GFF2194 0.38 -1.9 244,859 - GFF2194 0.39 -0.1 244,872 + GFF2194 0.44 -1.3 244,887 - GFF2194 0.49 -0.7
Or see this region's nucleotide sequence