Strain Fitness in Methylophilus sp. DMC18 around GFF2155

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2154 and GFF2155 overlap by 4 nucleotidesGFF2155 and GFF2156 are separated by 22 nucleotidesGFF2156 and GFF2157 are separated by 161 nucleotides GFF2154 - Porphobilinogen deaminase, at 200,241 to 201,185 GFF2154 GFF2155 - Uroporphyrinogen-III synthase, at 201,182 to 201,940 GFF2155 GFF2156 - hypothetical protein, at 201,963 to 202,628 GFF2156 GFF2157 - hypothetical protein, at 202,790 to 203,095 GFF2157 Position (kb) 201 202Strain fitness (log2 ratio) -2 -1 0 1 2at 201.938 kb on + strandat 201.938 kb on + strandat 201.938 kb on + strandat 201.938 kb on + strandat 201.939 kb on - strandat 201.965 kb on - strandat 201.981 kb on + strandat 201.981 kb on + strandat 201.982 kb on - strandat 202.002 kb on + strandat 202.002 kb on + strandat 202.003 kb on - strandat 202.070 kb on + strand, within GFF2156at 202.070 kb on + strand, within GFF2156at 202.071 kb on - strand, within GFF2156at 202.086 kb on + strand, within GFF2156at 202.086 kb on + strand, within GFF2156at 202.087 kb on - strand, within GFF2156at 202.100 kb on + strand, within GFF2156at 202.100 kb on + strand, within GFF2156at 202.100 kb on + strand, within GFF2156at 202.100 kb on + strand, within GFF2156at 202.101 kb on - strand, within GFF2156at 202.101 kb on - strand, within GFF2156at 202.103 kb on + strand, within GFF2156at 202.119 kb on + strand, within GFF2156at 202.133 kb on + strand, within GFF2156at 202.133 kb on + strand, within GFF2156at 202.133 kb on + strand, within GFF2156at 202.134 kb on - strand, within GFF2156at 202.134 kb on - strand, within GFF2156at 202.142 kb on + strand, within GFF2156at 202.143 kb on - strand, within GFF2156at 202.143 kb on - strand, within GFF2156at 202.143 kb on - strand, within GFF2156at 202.144 kb on + strand, within GFF2156at 202.144 kb on + strand, within GFF2156at 202.182 kb on - strand, within GFF2156at 202.182 kb on - strand, within GFF2156at 202.184 kb on + strand, within GFF2156at 202.184 kb on + strand, within GFF2156at 202.185 kb on - strand, within GFF2156at 202.185 kb on - strand, within GFF2156at 202.185 kb on - strand, within GFF2156at 202.191 kb on - strand, within GFF2156at 202.191 kb on - strand, within GFF2156at 202.191 kb on - strand, within GFF2156at 202.202 kb on + strand, within GFF2156at 202.202 kb on + strand, within GFF2156at 202.203 kb on - strand, within GFF2156at 202.203 kb on - strand, within GFF2156at 202.212 kb on - strand, within GFF2156at 202.214 kb on + strand, within GFF2156at 202.214 kb on + strand, within GFF2156at 202.214 kb on + strand, within GFF2156at 202.214 kb on + strand, within GFF2156at 202.215 kb on - strand, within GFF2156at 202.215 kb on - strand, within GFF2156at 202.215 kb on - strand, within GFF2156at 202.215 kb on - strand, within GFF2156at 202.238 kb on + strand, within GFF2156at 202.239 kb on - strand, within GFF2156at 202.255 kb on + strand, within GFF2156at 202.256 kb on + strand, within GFF2156at 202.256 kb on + strand, within GFF2156at 202.256 kb on + strand, within GFF2156at 202.281 kb on + strand, within GFF2156at 202.281 kb on + strand, within GFF2156at 202.281 kb on + strand, within GFF2156at 202.281 kb on + strand, within GFF2156at 202.281 kb on + strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.282 kb on - strand, within GFF2156at 202.284 kb on + strand, within GFF2156at 202.285 kb on - strand, within GFF2156at 202.285 kb on - strand, within GFF2156at 202.285 kb on - strand, within GFF2156at 202.302 kb on - strand, within GFF2156at 202.397 kb on + strand, within GFF2156at 202.541 kb on + strand, within GFF2156at 202.541 kb on + strand, within GFF2156at 202.542 kb on - strand, within GFF2156at 202.542 kb on - strand, within GFF2156at 202.542 kb on - strand, within GFF2156at 202.587 kb on + strandat 202.587 kb on + strandat 202.587 kb on + strandat 202.588 kb on - strandat 202.588 kb on - strandat 202.588 kb on - strandat 202.588 kb on - strandat 202.588 kb on - strandat 202.618 kb on + strandat 202.618 kb on + strandat 202.632 kb on + strandat 202.644 kb on + strandat 202.649 kb on - strandat 202.655 kb on - strandat 202.664 kb on - strandat 202.664 kb on - strandat 202.664 kb on - strandat 202.668 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.673 kb on + strandat 202.674 kb on - strandat 202.674 kb on - strandat 202.674 kb on - strandat 202.674 kb on - strandat 202.674 kb on - strandat 202.674 kb on - strandat 202.674 kb on - strandat 202.706 kb on - strandat 202.736 kb on + strandat 202.736 kb on + strandat 202.737 kb on - strandat 202.772 kb on - strandat 202.772 kb on - strandat 202.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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201,938 + -0.9
201,938 + -0.3
201,938 + -0.5
201,938 + -0.3
201,939 - -0.0
201,965 - -2.1
201,981 + -0.7
201,981 + +0.1
201,982 - -0.4
202,002 + +0.2
202,002 + -0.1
202,003 - -0.8
202,070 + GFF2156 0.16 -0.2
202,070 + GFF2156 0.16 -1.2
202,071 - GFF2156 0.16 +0.7
202,086 + GFF2156 0.18 +0.1
202,086 + GFF2156 0.18 +0.7
202,087 - GFF2156 0.19 -0.0
202,100 + GFF2156 0.21 -0.8
202,100 + GFF2156 0.21 -1.3
202,100 + GFF2156 0.21 -0.7
202,100 + GFF2156 0.21 -0.4
202,101 - GFF2156 0.21 -0.5
202,101 - GFF2156 0.21 -1.5
202,103 + GFF2156 0.21 -0.3
202,119 + GFF2156 0.23 -0.3
202,133 + GFF2156 0.26 -0.4
202,133 + GFF2156 0.26 -0.5
202,133 + GFF2156 0.26 -0.8
202,134 - GFF2156 0.26 -0.2
202,134 - GFF2156 0.26 -0.3
202,142 + GFF2156 0.27 -0.9
202,143 - GFF2156 0.27 -1.6
202,143 - GFF2156 0.27 +0.3
202,143 - GFF2156 0.27 -1.5
202,144 + GFF2156 0.27 -0.5
202,144 + GFF2156 0.27 -1.3
202,182 - GFF2156 0.33 +0.2
202,182 - GFF2156 0.33 -1.1
202,184 + GFF2156 0.33 -0.8
202,184 + GFF2156 0.33 +0.4
202,185 - GFF2156 0.33 -1.0
202,185 - GFF2156 0.33 -0.8
202,185 - GFF2156 0.33 -0.6
202,191 - GFF2156 0.34 -2.3
202,191 - GFF2156 0.34 -1.3
202,191 - GFF2156 0.34 -0.2
202,202 + GFF2156 0.36 -0.3
202,202 + GFF2156 0.36 -1.1
202,203 - GFF2156 0.36 -0.2
202,203 - GFF2156 0.36 -0.0
202,212 - GFF2156 0.37 +0.6
202,214 + GFF2156 0.38 +0.8
202,214 + GFF2156 0.38 +0.1
202,214 + GFF2156 0.38 -1.5
202,214 + GFF2156 0.38 -0.3
202,215 - GFF2156 0.38 -1.3
202,215 - GFF2156 0.38 -2.1
202,215 - GFF2156 0.38 +1.0
202,215 - GFF2156 0.38 -1.1
202,238 + GFF2156 0.41 +0.3
202,239 - GFF2156 0.41 +0.9
202,255 + GFF2156 0.44 -1.3
202,256 + GFF2156 0.44 +0.1
202,256 + GFF2156 0.44 -0.2
202,256 + GFF2156 0.44 +0.6
202,281 + GFF2156 0.48 +0.8
202,281 + GFF2156 0.48 +0.7
202,281 + GFF2156 0.48 -0.2
202,281 + GFF2156 0.48 -0.2
202,281 + GFF2156 0.48 +0.6
202,282 - GFF2156 0.48 -0.3
202,282 - GFF2156 0.48 -2.1
202,282 - GFF2156 0.48 +1.1
202,282 - GFF2156 0.48 +0.1
202,282 - GFF2156 0.48 -0.9
202,282 - GFF2156 0.48 -1.3
202,282 - GFF2156 0.48 +0.1
202,282 - GFF2156 0.48 -0.4
202,282 - GFF2156 0.48 -0.9
202,282 - GFF2156 0.48 +1.1
202,284 + GFF2156 0.48 -1.7
202,285 - GFF2156 0.48 -1.9
202,285 - GFF2156 0.48 -1.5
202,285 - GFF2156 0.48 -1.3
202,302 - GFF2156 0.51 -0.1
202,397 + GFF2156 0.65 -1.5
202,541 + GFF2156 0.87 -0.2
202,541 + GFF2156 0.87 -1.1
202,542 - GFF2156 0.87 -0.5
202,542 - GFF2156 0.87 +0.3
202,542 - GFF2156 0.87 +2.1
202,587 + -0.9
202,587 + -0.9
202,587 + +0.1
202,588 - -0.3
202,588 - -0.3
202,588 - -0.9
202,588 - +1.3
202,588 - -0.3
202,618 + +0.4
202,618 + -0.9
202,632 + -0.5
202,644 + -0.8
202,649 - -0.2
202,655 - -2.1
202,664 - -0.9
202,664 - +1.9
202,664 - +0.1
202,668 + -0.5
202,673 + +0.8
202,673 + +0.3
202,673 + -1.3
202,673 + -1.3
202,673 + -0.9
202,673 + +0.6
202,673 + -0.5
202,673 + -0.1
202,674 - -0.2
202,674 - -0.8
202,674 - -0.3
202,674 - -1.9
202,674 - +0.6
202,674 - -0.6
202,674 - -0.3
202,706 - -1.5
202,736 + -0.4
202,736 + -0.5
202,737 - -1.1
202,772 - -0.8
202,772 - +0.6
202,788 - -1.3

Or see this region's nucleotide sequence