Strain Fitness in Methylophilus sp. DMC18 around GFF129

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF128 and GFF129 are separated by 66 nucleotidesGFF129 and GFF130 are separated by 24 nucleotidesGFF130 and GFF131 are separated by 20 nucleotides GFF128 - Molybdenum-pterin-binding protein MopA, at 132,580 to 133,407 GFF128 GFF129 - Porin P, at 133,474 to 135,003 GFF129 GFF130 - Molybdate-binding protein ModA, at 135,028 to 135,786 GFF130 GFF131 - Sulfate transport system permease protein CysT, at 135,807 to 136,484 GFF131 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -2 -1 0 1at 132.477 kb on + strandat 132.477 kb on + strandat 132.477 kb on + strandat 132.478 kb on - strandat 132.478 kb on - strandat 132.524 kb on - strandat 132.535 kb on + strandat 132.611 kb on + strandat 132.611 kb on + strandat 132.612 kb on - strandat 132.612 kb on - strandat 132.697 kb on - strand, within GFF128at 132.714 kb on + strand, within GFF128at 132.715 kb on - strand, within GFF128at 132.748 kb on + strand, within GFF128at 132.748 kb on + strand, within GFF128at 132.748 kb on + strand, within GFF128at 132.748 kb on + strand, within GFF128at 132.748 kb on + strand, within GFF128at 132.749 kb on - strand, within GFF128at 132.813 kb on + strand, within GFF128at 132.814 kb on - strand, within GFF128at 132.890 kb on + strand, within GFF128at 132.955 kb on + strand, within GFF128at 132.955 kb on + strand, within GFF128at 132.955 kb on + strand, within GFF128at 132.955 kb on + strand, within GFF128at 132.955 kb on + strand, within GFF128at 132.955 kb on + strand, within GFF128at 132.956 kb on - strand, within GFF128at 132.956 kb on - strand, within GFF128at 132.956 kb on - strand, within GFF128at 132.957 kb on + strand, within GFF128at 132.957 kb on + strand, within GFF128at 132.957 kb on + strand, within GFF128at 132.957 kb on + strand, within GFF128at 132.958 kb on - strand, within GFF128at 132.958 kb on - strand, within GFF128at 133.082 kb on + strand, within GFF128at 133.082 kb on + strand, within GFF128at 133.083 kb on - strand, within GFF128at 133.083 kb on - strand, within GFF128at 133.083 kb on - strand, within GFF128at 133.362 kb on - strandat 133.392 kb on - strandat 133.425 kb on + strandat 133.425 kb on + strandat 133.426 kb on - strandat 133.426 kb on - strandat 133.438 kb on - strandat 133.471 kb on + strandat 133.472 kb on - strandat 133.472 kb on - strandat 133.472 kb on - strandat 133.490 kb on + strandat 133.490 kb on + strandat 133.491 kb on - strandat 133.589 kb on + strandat 133.748 kb on + strand, within GFF129at 133.749 kb on - strand, within GFF129at 133.848 kb on + strand, within GFF129at 133.871 kb on - strand, within GFF129at 133.905 kb on + strand, within GFF129at 133.905 kb on + strand, within GFF129at 133.906 kb on - strand, within GFF129at 133.938 kb on + strand, within GFF129at 133.939 kb on - strand, within GFF129at 133.939 kb on - strand, within GFF129at 133.981 kb on + strand, within GFF129at 134.020 kb on + strand, within GFF129at 134.020 kb on + strand, within GFF129at 134.020 kb on + strand, within GFF129at 134.021 kb on - strand, within GFF129at 134.021 kb on - strand, within GFF129at 134.035 kb on + strand, within GFF129at 134.036 kb on - strand, within GFF129at 134.036 kb on - strand, within GFF129at 134.046 kb on + strand, within GFF129at 134.086 kb on + strand, within GFF129at 134.086 kb on + strand, within GFF129at 134.149 kb on + strand, within GFF129at 134.150 kb on - strand, within GFF129at 134.150 kb on - strand, within GFF129at 134.150 kb on - strand, within GFF129at 134.215 kb on + strand, within GFF129at 134.215 kb on + strand, within GFF129at 134.216 kb on - strand, within GFF129at 134.216 kb on - strand, within GFF129at 134.238 kb on + strand, within GFF129at 134.239 kb on - strand, within GFF129at 134.287 kb on + strand, within GFF129at 134.326 kb on - strand, within GFF129at 134.364 kb on + strand, within GFF129at 134.377 kb on + strand, within GFF129at 134.424 kb on - strand, within GFF129at 134.424 kb on - strand, within GFF129at 134.424 kb on - strand, within GFF129at 134.424 kb on - strand, within GFF129at 134.424 kb on - strand, within GFF129at 134.450 kb on + strand, within GFF129at 134.451 kb on - strand, within GFF129at 134.538 kb on - strand, within GFF129at 134.538 kb on - strand, within GFF129at 134.550 kb on + strand, within GFF129at 134.550 kb on + strand, within GFF129at 134.550 kb on + strand, within GFF129at 134.550 kb on + strand, within GFF129at 134.550 kb on + strand, within GFF129at 134.550 kb on + strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.551 kb on - strand, within GFF129at 134.552 kb on + strand, within GFF129at 134.602 kb on + strand, within GFF129at 134.602 kb on + strand, within GFF129at 134.602 kb on + strand, within GFF129at 134.602 kb on + strand, within GFF129at 134.603 kb on - strand, within GFF129at 134.603 kb on - strand, within GFF129at 134.603 kb on - strand, within GFF129at 134.603 kb on - strand, within GFF129at 134.640 kb on + strand, within GFF129at 134.650 kb on + strand, within GFF129at 134.650 kb on + strand, within GFF129at 134.650 kb on + strand, within GFF129at 134.650 kb on + strand, within GFF129at 134.650 kb on + strand, within GFF129at 134.651 kb on - strand, within GFF129at 134.651 kb on - strand, within GFF129at 134.652 kb on + strand, within GFF129at 134.652 kb on + strand, within GFF129at 134.653 kb on - strand, within GFF129at 134.741 kb on - strand, within GFF129at 134.775 kb on + strand, within GFF129at 134.776 kb on - strand, within GFF129at 134.776 kb on - strand, within GFF129at 134.776 kb on - strand, within GFF129at 134.812 kb on - strand, within GFF129at 134.863 kb on + strandat 134.863 kb on + strandat 134.864 kb on - strandat 134.864 kb on - strandat 134.864 kb on - strandat 134.884 kb on + strandat 134.884 kb on + strandat 134.885 kb on - strandat 134.885 kb on - strandat 134.885 kb on - strandat 134.885 kb on - strandat 134.950 kb on + strandat 134.952 kb on + strandat 134.953 kb on - strandat 135.002 kb on - strandat 135.130 kb on + strand, within GFF130at 135.130 kb on + strand, within GFF130at 135.130 kb on + strand, within GFF130at 135.131 kb on - strand, within GFF130at 135.159 kb on + strand, within GFF130at 135.160 kb on - strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.248 kb on + strand, within GFF130at 135.249 kb on - strand, within GFF130at 135.249 kb on - strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.286 kb on + strand, within GFF130at 135.287 kb on - strand, within GFF130at 135.287 kb on - strand, within GFF130at 135.288 kb on + strand, within GFF130at 135.344 kb on + strand, within GFF130at 135.345 kb on - strand, within GFF130at 135.345 kb on - strand, within GFF130at 135.475 kb on + strand, within GFF130at 135.476 kb on - strand, within GFF130at 135.541 kb on + strand, within GFF130at 135.541 kb on + strand, within GFF130at 135.606 kb on + strand, within GFF130at 135.618 kb on + strand, within GFF130at 135.618 kb on + strand, within GFF130at 135.646 kb on + strand, within GFF130at 135.647 kb on - strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.689 kb on + strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.690 kb on - strand, within GFF130at 135.693 kb on + strand, within GFF130at 135.693 kb on + strand, within GFF130at 135.774 kb on + strandat 135.774 kb on + strandat 135.774 kb on + strandat 135.775 kb on - strandat 135.775 kb on - strandat 135.811 kb on + strandat 135.812 kb on - strandat 135.824 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.826 kb on + strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.827 kb on - strandat 135.874 kb on + strandat 135.875 kb on - strand, within GFF131at 135.887 kb on - strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.996 kb on + strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131at 135.997 kb on - strand, within GFF131

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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132,477 + +0.0
132,477 + +0.2
132,477 + -0.9
132,478 - -1.0
132,478 - +0.7
132,524 - -0.8
132,535 + +0.5
132,611 + -0.1
132,611 + -0.6
132,612 - -0.0
132,612 - -0.0
132,697 - GFF128 0.14 +0.3
132,714 + GFF128 0.16 -1.6
132,715 - GFF128 0.16 -1.0
132,748 + GFF128 0.20 -0.1
132,748 + GFF128 0.20 -0.6
132,748 + GFF128 0.20 -0.4
132,748 + GFF128 0.20 -1.2
132,748 + GFF128 0.20 -0.0
132,749 - GFF128 0.20 -0.5
132,813 + GFF128 0.28 -1.2
132,814 - GFF128 0.28 -1.3
132,890 + GFF128 0.37 -0.0
132,955 + GFF128 0.45 -0.8
132,955 + GFF128 0.45 -1.4
132,955 + GFF128 0.45 -0.6
132,955 + GFF128 0.45 -1.4
132,955 + GFF128 0.45 -0.4
132,955 + GFF128 0.45 -2.0
132,956 - GFF128 0.45 -0.7
132,956 - GFF128 0.45 -0.0
132,956 - GFF128 0.45 +0.6
132,957 + GFF128 0.46 +0.2
132,957 + GFF128 0.46 -1.0
132,957 + GFF128 0.46 -0.0
132,957 + GFF128 0.46 -0.3
132,958 - GFF128 0.46 +1.3
132,958 - GFF128 0.46 -1.9
133,082 + GFF128 0.61 -0.4
133,082 + GFF128 0.61 -0.1
133,083 - GFF128 0.61 -1.0
133,083 - GFF128 0.61 -0.6
133,083 - GFF128 0.61 -0.0
133,362 - -0.2
133,392 - -0.0
133,425 + -0.6
133,425 + +0.5
133,426 - -0.2
133,426 - -0.0
133,438 - -2.2
133,471 + -1.2
133,472 - -0.8
133,472 - -1.8
133,472 - -1.4
133,490 + -2.3
133,490 + -0.9
133,491 - -2.2
133,589 + -0.3
133,748 + GFF129 0.18 +0.5
133,749 - GFF129 0.18 +0.6
133,848 + GFF129 0.24 -0.4
133,871 - GFF129 0.26 -1.3
133,905 + GFF129 0.28 +0.2
133,905 + GFF129 0.28 +0.6
133,906 - GFF129 0.28 +0.8
133,938 + GFF129 0.30 -0.0
133,939 - GFF129 0.30 -0.9
133,939 - GFF129 0.30 +0.4
133,981 + GFF129 0.33 -0.9
134,020 + GFF129 0.36 -0.6
134,020 + GFF129 0.36 -0.9
134,020 + GFF129 0.36 -1.0
134,021 - GFF129 0.36 +0.8
134,021 - GFF129 0.36 +0.1
134,035 + GFF129 0.37 -2.3
134,036 - GFF129 0.37 -1.3
134,036 - GFF129 0.37 +0.6
134,046 + GFF129 0.37 -1.1
134,086 + GFF129 0.40 -0.6
134,086 + GFF129 0.40 -1.0
134,149 + GFF129 0.44 -1.0
134,150 - GFF129 0.44 -1.2
134,150 - GFF129 0.44 -2.2
134,150 - GFF129 0.44 -1.2
134,215 + GFF129 0.48 -0.4
134,215 + GFF129 0.48 +0.4
134,216 - GFF129 0.48 -1.2
134,216 - GFF129 0.48 +0.7
134,238 + GFF129 0.50 +0.2
134,239 - GFF129 0.50 -2.0
134,287 + GFF129 0.53 +0.6
134,326 - GFF129 0.56 +0.4
134,364 + GFF129 0.58 -0.0
134,377 + GFF129 0.59 -1.8
134,424 - GFF129 0.62 -0.3
134,424 - GFF129 0.62 -1.5
134,424 - GFF129 0.62 -0.2
134,424 - GFF129 0.62 +1.0
134,424 - GFF129 0.62 -0.3
134,450 + GFF129 0.64 +0.3
134,451 - GFF129 0.64 -0.3
134,538 - GFF129 0.70 -0.6
134,538 - GFF129 0.70 +0.2
134,550 + GFF129 0.70 -1.4
134,550 + GFF129 0.70 -1.1
134,550 + GFF129 0.70 +0.3
134,550 + GFF129 0.70 -1.6
134,550 + GFF129 0.70 +0.5
134,550 + GFF129 0.70 -0.7
134,551 - GFF129 0.70 -0.0
134,551 - GFF129 0.70 -0.4
134,551 - GFF129 0.70 -0.7
134,551 - GFF129 0.70 +0.5
134,551 - GFF129 0.70 -1.2
134,551 - GFF129 0.70 -2.3
134,551 - GFF129 0.70 -0.2
134,551 - GFF129 0.70 -0.8
134,552 + GFF129 0.70 -0.9
134,602 + GFF129 0.74 -1.0
134,602 + GFF129 0.74 +1.0
134,602 + GFF129 0.74 -0.6
134,602 + GFF129 0.74 -0.2
134,603 - GFF129 0.74 +0.6
134,603 - GFF129 0.74 -0.2
134,603 - GFF129 0.74 -1.6
134,603 - GFF129 0.74 +0.7
134,640 + GFF129 0.76 -0.8
134,650 + GFF129 0.77 -0.4
134,650 + GFF129 0.77 -1.2
134,650 + GFF129 0.77 -1.0
134,650 + GFF129 0.77 -1.3
134,650 + GFF129 0.77 +0.0
134,651 - GFF129 0.77 -0.6
134,651 - GFF129 0.77 -0.9
134,652 + GFF129 0.77 +0.4
134,652 + GFF129 0.77 -0.8
134,653 - GFF129 0.77 -0.3
134,741 - GFF129 0.83 -1.5
134,775 + GFF129 0.85 +0.3
134,776 - GFF129 0.85 -1.0
134,776 - GFF129 0.85 -1.8
134,776 - GFF129 0.85 -1.3
134,812 - GFF129 0.87 +0.3
134,863 + +0.6
134,863 + -0.3
134,864 - -0.9
134,864 - +0.5
134,864 - -1.0
134,884 + -0.0
134,884 + -1.8
134,885 - +0.3
134,885 - +0.1
134,885 - -1.2
134,885 - -0.3
134,950 + +0.0
134,952 + -0.0
134,953 - -0.0
135,002 - -1.0
135,130 + GFF130 0.13 -1.5
135,130 + GFF130 0.13 -1.0
135,130 + GFF130 0.13 -0.5
135,131 - GFF130 0.14 -0.2
135,159 + GFF130 0.17 -2.0
135,160 - GFF130 0.17 +0.2
135,248 + GFF130 0.29 -1.7
135,248 + GFF130 0.29 -0.9
135,248 + GFF130 0.29 -1.3
135,248 + GFF130 0.29 -1.6
135,249 - GFF130 0.29 -2.0
135,249 - GFF130 0.29 -1.2
135,286 + GFF130 0.34 -1.7
135,286 + GFF130 0.34 -0.4
135,286 + GFF130 0.34 -0.4
135,286 + GFF130 0.34 -1.8
135,286 + GFF130 0.34 -1.8
135,286 + GFF130 0.34 -0.4
135,287 - GFF130 0.34 -1.3
135,287 - GFF130 0.34 -2.0
135,288 + GFF130 0.34 -1.0
135,344 + GFF130 0.42 -1.3
135,345 - GFF130 0.42 +1.6
135,345 - GFF130 0.42 +0.2
135,475 + GFF130 0.59 -0.2
135,476 - GFF130 0.59 -0.3
135,541 + GFF130 0.68 -0.0
135,541 + GFF130 0.68 -2.2
135,606 + GFF130 0.76 +0.6
135,618 + GFF130 0.78 -1.6
135,618 + GFF130 0.78 -0.4
135,646 + GFF130 0.81 -0.2
135,647 - GFF130 0.82 -1.3
135,689 + GFF130 0.87 -0.0
135,689 + GFF130 0.87 -0.3
135,689 + GFF130 0.87 -1.8
135,689 + GFF130 0.87 -1.0
135,689 + GFF130 0.87 -1.2
135,689 + GFF130 0.87 +0.6
135,690 - GFF130 0.87 -0.3
135,690 - GFF130 0.87 -1.3
135,690 - GFF130 0.87 +0.6
135,690 - GFF130 0.87 -1.2
135,693 + GFF130 0.88 -1.3
135,693 + GFF130 0.88 -1.8
135,774 + +0.2
135,774 + -1.9
135,774 + -1.3
135,775 - -2.0
135,775 - -1.8
135,811 + -0.4
135,812 - -0.2
135,824 + -0.9
135,826 + -2.6
135,826 + -2.2
135,826 + -0.3
135,826 + -0.7
135,826 + -0.3
135,826 + -1.6
135,826 + -1.0
135,826 + -0.9
135,827 - -2.5
135,827 - -1.6
135,827 - -1.3
135,827 - -2.3
135,874 + -2.3
135,875 - GFF131 0.10 -1.6
135,887 - GFF131 0.12 -1.8
135,996 + GFF131 0.28 -0.9
135,996 + GFF131 0.28 -0.3
135,996 + GFF131 0.28 -2.2
135,996 + GFF131 0.28 -1.0
135,997 - GFF131 0.28 -2.1
135,997 - GFF131 0.28 +0.6
135,997 - GFF131 0.28 -1.0
135,997 - GFF131 0.28 -1.8

Or see this region's nucleotide sequence