Strain Fitness in Methylophilus sp. DMC18 around GFF1265

Experiment: Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1264 and GFF1265 are separated by 48 nucleotidesGFF1265 and GFF1266 are separated by 83 nucleotides GFF1264 - Phosphate acyltransferase, at 517,518 to 518,570 GFF1264 GFF1265 - 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1, at 518,619 to 519,560 GFF1265 GFF1266 - Malonyl CoA-acyl carrier protein transacylase, at 519,644 to 520,567 GFF1266 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1at 518.583 kb on + strandat 518.583 kb on + strandat 519.558 kb on + strandat 519.574 kb on + strandat 519.574 kb on + strandat 519.574 kb on + strandat 519.619 kb on + strandat 519.627 kb on + strandat 519.627 kb on + strandat 519.627 kb on + strandat 519.631 kb on + strandat 519.643 kb on + strandat 519.643 kb on + strandat 520.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Methylosinus sp. DMC45 grown in dNMS with methane 1x
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518,583 + +0.8
518,583 + -1.9
519,558 + -1.0
519,574 + +1.1
519,574 + -0.1
519,574 + -0.8
519,619 + +0.1
519,627 + -0.4
519,627 + -1.2
519,627 + -1.1
519,631 + -0.8
519,643 + -1.4
519,643 + -1.7
520,558 + +0.6

Or see this region's nucleotide sequence