Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12550

Experiment: Erythromycin stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12545 and ABZR88_RS12550 are separated by 4 nucleotidesABZR88_RS12550 and ABZR88_RS12555 are separated by 382 nucleotidesABZR88_RS12555 and ABZR88_RS12560 are separated by 50 nucleotides ABZR88_RS12545: ABZR88_RS12545 - efflux RND transporter permease subunit, at 3,088,806 to 3,091,994 _RS12545 ABZR88_RS12550: ABZR88_RS12550 - efflux transporter outer membrane subunit, at 3,091,999 to 3,093,411 _RS12550 ABZR88_RS12555: ABZR88_RS12555 - response regulator transcription factor, at 3,093,794 to 3,094,165 _RS12555 ABZR88_RS12560: ABZR88_RS12560 - glycosyltransferase family 2 protein, at 3,094,216 to 3,094,947 _RS12560 Position (kb) 3091 3092 3093 3094Strain fitness (log2 ratio) -2 -1 0 1at 3091.004 kb on + strand, within ABZR88_RS12545at 3091.155 kb on - strand, within ABZR88_RS12545at 3091.211 kb on - strand, within ABZR88_RS12545at 3091.292 kb on + strand, within ABZR88_RS12545at 3091.295 kb on + strand, within ABZR88_RS12545at 3091.317 kb on + strand, within ABZR88_RS12545at 3091.381 kb on - strand, within ABZR88_RS12545at 3091.444 kb on + strand, within ABZR88_RS12545at 3091.445 kb on - strand, within ABZR88_RS12545at 3091.491 kb on + strand, within ABZR88_RS12545at 3091.556 kb on - strand, within ABZR88_RS12545at 3091.593 kb on + strand, within ABZR88_RS12545at 3091.660 kb on - strand, within ABZR88_RS12545at 3091.885 kb on + strandat 3091.905 kb on + strandat 3092.022 kb on - strandat 3092.218 kb on + strand, within ABZR88_RS12550at 3092.301 kb on + strand, within ABZR88_RS12550at 3092.302 kb on - strand, within ABZR88_RS12550at 3092.389 kb on - strand, within ABZR88_RS12550at 3092.480 kb on - strand, within ABZR88_RS12550at 3092.492 kb on - strand, within ABZR88_RS12550at 3092.548 kb on + strand, within ABZR88_RS12550at 3092.619 kb on - strand, within ABZR88_RS12550at 3092.619 kb on - strand, within ABZR88_RS12550at 3092.619 kb on - strand, within ABZR88_RS12550at 3092.941 kb on + strand, within ABZR88_RS12550at 3092.942 kb on - strand, within ABZR88_RS12550at 3092.956 kb on - strand, within ABZR88_RS12550at 3093.043 kb on - strand, within ABZR88_RS12550at 3093.177 kb on - strand, within ABZR88_RS12550at 3093.599 kb on + strandat 3093.697 kb on + strandat 3093.786 kb on - strandat 3093.982 kb on + strand, within ABZR88_RS12555at 3093.992 kb on + strand, within ABZR88_RS12555at 3093.992 kb on + strand, within ABZR88_RS12555at 3093.997 kb on + strand, within ABZR88_RS12555at 3094.021 kb on + strand, within ABZR88_RS12555at 3094.248 kb on - strandat 3094.248 kb on - strandat 3094.257 kb on + strandat 3094.267 kb on + strandat 3094.268 kb on - strandat 3094.356 kb on - strand, within ABZR88_RS12560at 3094.377 kb on + strand, within ABZR88_RS12560at 3094.378 kb on - strand, within ABZR88_RS12560

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Per-strain Table

Position Strand Gene LocusTag Fraction Erythromycin stress 0.05 mg/ml
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3,091,004 + ABZR88_RS12545 0.69 -1.0
3,091,155 - ABZR88_RS12545 0.74 -0.5
3,091,211 - ABZR88_RS12545 0.75 -0.7
3,091,292 + ABZR88_RS12545 0.78 -1.2
3,091,295 + ABZR88_RS12545 0.78 -1.1
3,091,317 + ABZR88_RS12545 0.79 -0.9
3,091,381 - ABZR88_RS12545 0.81 -0.8
3,091,444 + ABZR88_RS12545 0.83 -1.7
3,091,445 - ABZR88_RS12545 0.83 -0.1
3,091,491 + ABZR88_RS12545 0.84 -1.3
3,091,556 - ABZR88_RS12545 0.86 -1.0
3,091,593 + ABZR88_RS12545 0.87 -1.8
3,091,660 - ABZR88_RS12545 0.89 -0.6
3,091,885 + +0.4
3,091,905 + -2.1
3,092,022 - -0.3
3,092,218 + ABZR88_RS12550 0.15 -1.1
3,092,301 + ABZR88_RS12550 0.21 -0.7
3,092,302 - ABZR88_RS12550 0.21 -0.2
3,092,389 - ABZR88_RS12550 0.28 -0.5
3,092,480 - ABZR88_RS12550 0.34 +0.2
3,092,492 - ABZR88_RS12550 0.35 -0.2
3,092,548 + ABZR88_RS12550 0.39 -0.3
3,092,619 - ABZR88_RS12550 0.44 -1.0
3,092,619 - ABZR88_RS12550 0.44 -0.3
3,092,619 - ABZR88_RS12550 0.44 -0.4
3,092,941 + ABZR88_RS12550 0.67 -1.7
3,092,942 - ABZR88_RS12550 0.67 -0.4
3,092,956 - ABZR88_RS12550 0.68 -0.5
3,093,043 - ABZR88_RS12550 0.74 -0.4
3,093,177 - ABZR88_RS12550 0.83 -0.9
3,093,599 + +0.9
3,093,697 + +0.4
3,093,786 - -0.4
3,093,982 + ABZR88_RS12555 0.51 -0.1
3,093,992 + ABZR88_RS12555 0.53 +0.2
3,093,992 + ABZR88_RS12555 0.53 +0.0
3,093,997 + ABZR88_RS12555 0.55 +0.7
3,094,021 + ABZR88_RS12555 0.61 +0.0
3,094,248 - +0.0
3,094,248 - -0.0
3,094,257 + +0.2
3,094,267 + +0.0
3,094,268 - -0.1
3,094,356 - ABZR88_RS12560 0.19 -0.2
3,094,377 + ABZR88_RS12560 0.22 +0.1
3,094,378 - ABZR88_RS12560 0.22 +0.1

Or see this region's nucleotide sequence