Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12165

Experiment: Erythromycin stress 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS12155 and ABZR88_RS12160 overlap by 32 nucleotidesABZR88_RS12160 and ABZR88_RS12165 are separated by 34 nucleotidesABZR88_RS12165 and ABZR88_RS12170 are separated by 343 nucleotides ABZR88_RS12155: ABZR88_RS12155 - hypothetical protein, at 2,988,012 to 2,988,722 _RS12155 ABZR88_RS12160: ABZR88_RS12160 - carbohydrate binding domain-containing protein, at 2,988,691 to 2,989,341 _RS12160 ABZR88_RS12165: ABZR88_RS12165 - TIM-barrel domain-containing protein, at 2,989,376 to 2,991,709 _RS12165 ABZR88_RS12170: ABZR88_RS12170 - response regulator, at 2,992,053 to 2,996,048 _RS12170 Position (kb) 2989 2990 2991 2992Strain fitness (log2 ratio) -1 0 1at 2988.384 kb on - strand, within ABZR88_RS12155at 2988.388 kb on - strand, within ABZR88_RS12155at 2988.521 kb on + strand, within ABZR88_RS12155at 2988.579 kb on - strand, within ABZR88_RS12155at 2988.638 kb on + strand, within ABZR88_RS12155at 2988.672 kb on + strandat 2988.717 kb on + strandat 2988.780 kb on + strand, within ABZR88_RS12160at 2988.819 kb on + strand, within ABZR88_RS12160at 2988.872 kb on - strand, within ABZR88_RS12160at 2989.026 kb on - strand, within ABZR88_RS12160at 2989.098 kb on + strand, within ABZR88_RS12160at 2989.098 kb on + strand, within ABZR88_RS12160at 2989.184 kb on - strand, within ABZR88_RS12160at 2989.206 kb on + strand, within ABZR88_RS12160at 2989.243 kb on + strand, within ABZR88_RS12160at 2989.244 kb on - strand, within ABZR88_RS12160at 2989.370 kb on + strandat 2989.503 kb on - strandat 2989.660 kb on + strand, within ABZR88_RS12165at 2989.743 kb on + strand, within ABZR88_RS12165at 2989.797 kb on - strand, within ABZR88_RS12165at 2990.011 kb on - strand, within ABZR88_RS12165at 2990.095 kb on - strand, within ABZR88_RS12165at 2990.132 kb on + strand, within ABZR88_RS12165at 2990.170 kb on - strand, within ABZR88_RS12165at 2990.170 kb on - strand, within ABZR88_RS12165at 2990.171 kb on + strand, within ABZR88_RS12165at 2990.172 kb on - strand, within ABZR88_RS12165at 2990.172 kb on - strand, within ABZR88_RS12165at 2990.325 kb on - strand, within ABZR88_RS12165at 2990.345 kb on - strand, within ABZR88_RS12165at 2990.608 kb on + strand, within ABZR88_RS12165at 2990.626 kb on + strand, within ABZR88_RS12165at 2990.707 kb on + strand, within ABZR88_RS12165at 2990.812 kb on + strand, within ABZR88_RS12165at 2990.813 kb on - strand, within ABZR88_RS12165at 2990.843 kb on - strand, within ABZR88_RS12165at 2990.900 kb on - strand, within ABZR88_RS12165at 2991.053 kb on - strand, within ABZR88_RS12165at 2991.079 kb on + strand, within ABZR88_RS12165at 2991.181 kb on + strand, within ABZR88_RS12165at 2991.182 kb on - strand, within ABZR88_RS12165at 2991.182 kb on - strand, within ABZR88_RS12165at 2991.185 kb on + strand, within ABZR88_RS12165at 2991.186 kb on - strand, within ABZR88_RS12165at 2991.285 kb on - strand, within ABZR88_RS12165at 2991.583 kb on - strandat 2991.686 kb on + strandat 2991.760 kb on - strandat 2991.822 kb on - strandat 2991.825 kb on + strandat 2991.883 kb on + strandat 2992.062 kb on - strandat 2992.514 kb on - strand, within ABZR88_RS12170at 2992.602 kb on + strand, within ABZR88_RS12170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Erythromycin stress 0.05 mg/ml
remove
2,988,384 - ABZR88_RS12155 0.52 +0.4
2,988,388 - ABZR88_RS12155 0.53 -0.0
2,988,521 + ABZR88_RS12155 0.72 +0.1
2,988,579 - ABZR88_RS12155 0.80 +0.8
2,988,638 + ABZR88_RS12155 0.88 +0.6
2,988,672 + -0.0
2,988,717 + +0.3
2,988,780 + ABZR88_RS12160 0.14 -0.3
2,988,819 + ABZR88_RS12160 0.20 +0.4
2,988,872 - ABZR88_RS12160 0.28 +0.1
2,989,026 - ABZR88_RS12160 0.51 +0.2
2,989,098 + ABZR88_RS12160 0.63 +0.1
2,989,098 + ABZR88_RS12160 0.63 +0.0
2,989,184 - ABZR88_RS12160 0.76 +0.2
2,989,206 + ABZR88_RS12160 0.79 -0.1
2,989,243 + ABZR88_RS12160 0.85 +0.4
2,989,244 - ABZR88_RS12160 0.85 -0.3
2,989,370 + +0.1
2,989,503 - +0.1
2,989,660 + ABZR88_RS12165 0.12 +1.4
2,989,743 + ABZR88_RS12165 0.16 +0.3
2,989,797 - ABZR88_RS12165 0.18 +1.2
2,990,011 - ABZR88_RS12165 0.27 +0.1
2,990,095 - ABZR88_RS12165 0.31 +0.1
2,990,132 + ABZR88_RS12165 0.32 -0.1
2,990,170 - ABZR88_RS12165 0.34 +0.0
2,990,170 - ABZR88_RS12165 0.34 +0.0
2,990,171 + ABZR88_RS12165 0.34 +0.1
2,990,172 - ABZR88_RS12165 0.34 -0.7
2,990,172 - ABZR88_RS12165 0.34 -0.4
2,990,325 - ABZR88_RS12165 0.41 -0.1
2,990,345 - ABZR88_RS12165 0.42 -0.1
2,990,608 + ABZR88_RS12165 0.53 +0.2
2,990,626 + ABZR88_RS12165 0.54 +0.0
2,990,707 + ABZR88_RS12165 0.57 -0.1
2,990,812 + ABZR88_RS12165 0.62 +0.0
2,990,813 - ABZR88_RS12165 0.62 +0.1
2,990,843 - ABZR88_RS12165 0.63 -0.1
2,990,900 - ABZR88_RS12165 0.65 +0.7
2,991,053 - ABZR88_RS12165 0.72 -0.9
2,991,079 + ABZR88_RS12165 0.73 +0.2
2,991,181 + ABZR88_RS12165 0.77 -0.1
2,991,182 - ABZR88_RS12165 0.77 +0.2
2,991,182 - ABZR88_RS12165 0.77 +0.0
2,991,185 + ABZR88_RS12165 0.78 +0.2
2,991,186 - ABZR88_RS12165 0.78 -0.0
2,991,285 - ABZR88_RS12165 0.82 +0.3
2,991,583 - +0.0
2,991,686 + +0.0
2,991,760 - +0.0
2,991,822 - -0.2
2,991,825 + -0.1
2,991,883 + +0.7
2,992,062 - +0.0
2,992,514 - ABZR88_RS12170 0.12 +0.2
2,992,602 + ABZR88_RS12170 0.14 +0.2

Or see this region's nucleotide sequence