Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS21300 and ABZR88_RS21305 are separated by 83 nucleotides ABZR88_RS21305 and ABZR88_RS21310 are separated by 134 nucleotides ABZR88_RS21310 and ABZR88_RS21315 are separated by 98 nucleotides
ABZR88_RS21300: ABZR88_RS21300 - hypothetical protein, at 5,133,440 to 5,134,081
_RS21300
ABZR88_RS21305: ABZR88_RS21305 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 5,134,165 to 5,134,779
_RS21305
ABZR88_RS21310: ABZR88_RS21310 - DUF4142 domain-containing protein, at 5,134,914 to 5,135,495
_RS21310
ABZR88_RS21315: ABZR88_RS21315 - glyoxalase/bleomycin resistance/extradiol dioxygenase family protein, at 5,135,594 to 5,135,971
_RS21315
Position (kb) 5134
5135 Strain fitness (log2 ratio) -2
-1
0
1 at 5133.171 kb on + strand at 5133.271 kb on + strand at 5133.350 kb on - strand at 5133.382 kb on - strand at 5133.655 kb on + strand, within ABZR88_RS21300 at 5133.656 kb on - strand, within ABZR88_RS21300 at 5134.009 kb on - strand, within ABZR88_RS21300 at 5134.089 kb on + strand at 5134.090 kb on - strand at 5134.101 kb on - strand at 5134.182 kb on - strand at 5134.182 kb on - strand at 5134.182 kb on - strand at 5134.392 kb on - strand, within ABZR88_RS21305 at 5134.641 kb on + strand, within ABZR88_RS21305 at 5134.767 kb on - strand at 5134.870 kb on + strand at 5134.870 kb on + strand at 5134.924 kb on + strand at 5134.929 kb on + strand at 5135.569 kb on - strand at 5135.664 kb on - strand, within ABZR88_RS21315 at 5135.664 kb on - strand, within ABZR88_RS21315
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 5,133,171 + +1.1 5,133,271 + +0.3 5,133,350 - +0.2 5,133,382 - -1.0 5,133,655 + ABZR88_RS21300 0.33 +0.1 5,133,656 - ABZR88_RS21300 0.34 +0.0 5,134,009 - ABZR88_RS21300 0.89 -1.9 5,134,089 + +0.2 5,134,090 - -0.2 5,134,101 - -0.1 5,134,182 - -0.2 5,134,182 - +0.4 5,134,182 - -0.4 5,134,392 - ABZR88_RS21305 0.37 -0.4 5,134,641 + ABZR88_RS21305 0.77 +0.1 5,134,767 - -0.0 5,134,870 + +0.5 5,134,870 + +0.3 5,134,924 + +0.0 5,134,929 + +0.1 5,135,569 - -0.2 5,135,664 - ABZR88_RS21315 0.19 +0.0 5,135,664 - ABZR88_RS21315 0.19 -0.0
Or see this region's nucleotide sequence