Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS20560 and ABZR88_RS20565 are separated by 1 nucleotides ABZR88_RS20565 and ABZR88_RS20570 overlap by 1 nucleotides ABZR88_RS20570 and ABZR88_RS20575 are separated by 57 nucleotides ABZR88_RS20575 and ABZR88_RS20580 are separated by 135 nucleotides
ABZR88_RS20560: ABZR88_RS20560 - DUF4175 family protein, at 4,978,018 to 4,981,452
_RS20560
ABZR88_RS20565: ABZR88_RS20565 - ATP-binding protein, at 4,981,454 to 4,981,876
_RS20565
ABZR88_RS20570: ABZR88_RS20570 - rRNA maturation RNase YbeY, at 4,981,876 to 4,982,301
_RS20570
ABZR88_RS20575: ABZR88_RS20575 - glutathione peroxidase, at 4,982,359 to 4,982,874
_RS20575
ABZR88_RS20580: ABZR88_RS20580 - proline iminopeptidase-family hydrolase, at 4,983,010 to 4,984,029
_RS20580
Position (kb) 4982
4983 Strain fitness (log2 ratio) -1
0
1 at 4981.383 kb on - strand at 4981.440 kb on + strand at 4981.441 kb on - strand at 4981.628 kb on - strand, within ABZR88_RS20565 at 4981.628 kb on - strand, within ABZR88_RS20565 at 4982.337 kb on - strand at 4982.352 kb on + strand at 4982.353 kb on - strand at 4982.358 kb on + strand at 4982.558 kb on - strand, within ABZR88_RS20575 at 4982.558 kb on - strand, within ABZR88_RS20575 at 4982.663 kb on + strand, within ABZR88_RS20575 at 4982.664 kb on - strand, within ABZR88_RS20575 at 4982.842 kb on - strand at 4982.864 kb on - strand at 4983.023 kb on + strand at 4983.023 kb on + strand at 4983.023 kb on + strand at 4983.238 kb on + strand, within ABZR88_RS20580 at 4983.239 kb on - strand, within ABZR88_RS20580 at 4983.293 kb on - strand, within ABZR88_RS20580 at 4983.328 kb on - strand, within ABZR88_RS20580 at 4983.362 kb on + strand, within ABZR88_RS20580 at 4983.409 kb on + strand, within ABZR88_RS20580 at 4983.498 kb on + strand, within ABZR88_RS20580 at 4983.525 kb on - strand, within ABZR88_RS20580 at 4983.701 kb on + strand, within ABZR88_RS20580 at 4983.702 kb on - strand, within ABZR88_RS20580 at 4983.826 kb on - strand, within ABZR88_RS20580 at 4983.847 kb on + strand, within ABZR88_RS20580
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 4,981,383 - -0.4 4,981,440 + -0.1 4,981,441 - -0.3 4,981,628 - ABZR88_RS20565 0.41 +0.3 4,981,628 - ABZR88_RS20565 0.41 -0.1 4,982,337 - -0.2 4,982,352 + +0.5 4,982,353 - -0.6 4,982,358 + +0.2 4,982,558 - ABZR88_RS20575 0.39 -0.5 4,982,558 - ABZR88_RS20575 0.39 +0.0 4,982,663 + ABZR88_RS20575 0.59 -0.4 4,982,664 - ABZR88_RS20575 0.59 -0.1 4,982,842 - -0.1 4,982,864 - -0.5 4,983,023 + -0.5 4,983,023 + +0.7 4,983,023 + +0.0 4,983,238 + ABZR88_RS20580 0.22 +0.7 4,983,239 - ABZR88_RS20580 0.22 -0.2 4,983,293 - ABZR88_RS20580 0.28 -0.3 4,983,328 - ABZR88_RS20580 0.31 -0.2 4,983,362 + ABZR88_RS20580 0.35 -0.8 4,983,409 + ABZR88_RS20580 0.39 -0.7 4,983,498 + ABZR88_RS20580 0.48 +0.0 4,983,525 - ABZR88_RS20580 0.50 +0.7 4,983,701 + ABZR88_RS20580 0.68 -0.3 4,983,702 - ABZR88_RS20580 0.68 -0.3 4,983,826 - ABZR88_RS20580 0.80 +0.1 4,983,847 + ABZR88_RS20580 0.82 -0.5
Or see this region's nucleotide sequence