Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS16150

Experiment: Trimethoprim stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS16145 and ABZR88_RS16150 are separated by 217 nucleotidesABZR88_RS16150 and ABZR88_RS16155 are separated by 61 nucleotides ABZR88_RS16145: ABZR88_RS16145 - MFS transporter, at 3,975,366 to 3,976,529 _RS16145 ABZR88_RS16150: ABZR88_RS16150 - xylose isomerase, at 3,976,747 to 3,978,075 _RS16150 ABZR88_RS16155: ABZR88_RS16155 - xylulokinase, at 3,978,137 to 3,979,639 _RS16155 Position (kb) 3976 3977 3978 3979Strain fitness (log2 ratio) -1 0 1at 3975.765 kb on + strand, within ABZR88_RS16145at 3975.776 kb on + strand, within ABZR88_RS16145at 3976.051 kb on - strand, within ABZR88_RS16145at 3976.068 kb on + strand, within ABZR88_RS16145at 3976.069 kb on - strand, within ABZR88_RS16145at 3976.120 kb on + strand, within ABZR88_RS16145at 3976.378 kb on + strand, within ABZR88_RS16145at 3976.424 kb on - strandat 3976.648 kb on + strandat 3976.754 kb on + strandat 3976.754 kb on + strandat 3976.799 kb on - strandat 3977.066 kb on - strand, within ABZR88_RS16150at 3977.104 kb on - strand, within ABZR88_RS16150at 3977.153 kb on + strand, within ABZR88_RS16150at 3977.209 kb on + strand, within ABZR88_RS16150at 3977.331 kb on - strand, within ABZR88_RS16150at 3977.539 kb on - strand, within ABZR88_RS16150at 3977.593 kb on - strand, within ABZR88_RS16150at 3977.610 kb on - strand, within ABZR88_RS16150at 3977.684 kb on + strand, within ABZR88_RS16150at 3977.725 kb on - strand, within ABZR88_RS16150at 3978.372 kb on - strand, within ABZR88_RS16155at 3978.907 kb on + strand, within ABZR88_RS16155

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Per-strain Table

Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml
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3,975,765 + ABZR88_RS16145 0.34 -0.2
3,975,776 + ABZR88_RS16145 0.35 +0.1
3,976,051 - ABZR88_RS16145 0.59 -0.1
3,976,068 + ABZR88_RS16145 0.60 +1.0
3,976,069 - ABZR88_RS16145 0.60 +0.3
3,976,120 + ABZR88_RS16145 0.65 -0.1
3,976,378 + ABZR88_RS16145 0.87 -0.7
3,976,424 - -0.6
3,976,648 + -0.5
3,976,754 + -0.1
3,976,754 + -0.6
3,976,799 - -0.2
3,977,066 - ABZR88_RS16150 0.24 +0.4
3,977,104 - ABZR88_RS16150 0.27 -0.6
3,977,153 + ABZR88_RS16150 0.31 -0.2
3,977,209 + ABZR88_RS16150 0.35 -0.2
3,977,331 - ABZR88_RS16150 0.44 +0.5
3,977,539 - ABZR88_RS16150 0.60 -0.9
3,977,593 - ABZR88_RS16150 0.64 +1.3
3,977,610 - ABZR88_RS16150 0.65 -0.4
3,977,684 + ABZR88_RS16150 0.71 -0.5
3,977,725 - ABZR88_RS16150 0.74 -0.3
3,978,372 - ABZR88_RS16155 0.16 -0.0
3,978,907 + ABZR88_RS16155 0.51 -0.8

Or see this region's nucleotide sequence