Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS15510

Experiment: Trimethoprim stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS15505 and ABZR88_RS15510 overlap by 11 nucleotidesABZR88_RS15510 and ABZR88_RS15515 are separated by 4 nucleotides ABZR88_RS15505: ABZR88_RS15505 - N-acetyl-gamma-glutamyl-phosphate reductase, at 3,834,115 to 3,835,119 _RS15505 ABZR88_RS15510: ABZR88_RS15510 - cupin domain-containing protein, at 3,835,109 to 3,835,462 _RS15510 ABZR88_RS15515: ABZR88_RS15515 - argininosuccinate synthase, at 3,835,467 to 3,836,654 _RS15515 Position (kb) 3835 3836Strain fitness (log2 ratio) -1 0 1at 3834.917 kb on - strand, within ABZR88_RS15505at 3835.046 kb on - strandat 3835.181 kb on - strand, within ABZR88_RS15510at 3835.265 kb on - strand, within ABZR88_RS15510at 3835.287 kb on - strand, within ABZR88_RS15510at 3835.436 kb on - strandat 3836.441 kb on + strand, within ABZR88_RS15515

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Per-strain Table

Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml
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3,834,917 - ABZR88_RS15505 0.80 +1.1
3,835,046 - +1.2
3,835,181 - ABZR88_RS15510 0.20 +0.0
3,835,265 - ABZR88_RS15510 0.44 -0.2
3,835,287 - ABZR88_RS15510 0.50 -1.0
3,835,436 - -0.3
3,836,441 + ABZR88_RS15515 0.82 +0.6

Or see this region's nucleotide sequence