Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS11935 and ABZR88_RS11940 are separated by 16 nucleotides ABZR88_RS11940 and ABZR88_RS11945 overlap by 4 nucleotides ABZR88_RS11945 and ABZR88_RS11950 are separated by 163 nucleotides
ABZR88_RS11935: ABZR88_RS11935 - SPOR domain-containing protein, at 2,940,626 to 2,941,963
_RS11935
ABZR88_RS11940: ABZR88_RS11940 - MotA/TolQ/ExbB proton channel family protein, at 2,941,980 to 2,942,681
_RS11940
ABZR88_RS11945: ABZR88_RS11945 - biopolymer transporter ExbD, at 2,942,678 to 2,943,076
_RS11945
ABZR88_RS11950: ABZR88_RS11950 - energy transducer TonB, at 2,943,240 to 2,944,052
_RS11950
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-2
-1
0
1 at 2941.687 kb on + strand, within ABZR88_RS11935 at 2941.714 kb on - strand, within ABZR88_RS11935 at 2941.850 kb on - strand at 2941.868 kb on + strand at 2941.873 kb on + strand at 2941.975 kb on - strand at 2942.036 kb on + strand at 2942.048 kb on + strand at 2942.123 kb on - strand, within ABZR88_RS11940 at 2942.160 kb on + strand, within ABZR88_RS11940 at 2942.166 kb on - strand, within ABZR88_RS11940 at 2942.427 kb on - strand, within ABZR88_RS11940 at 2942.501 kb on + strand, within ABZR88_RS11940 at 2942.502 kb on - strand, within ABZR88_RS11940 at 2942.601 kb on - strand, within ABZR88_RS11940 at 2942.685 kb on + strand at 2943.026 kb on - strand, within ABZR88_RS11945 at 2943.026 kb on - strand, within ABZR88_RS11945 at 2943.028 kb on - strand, within ABZR88_RS11945 at 2943.028 kb on - strand, within ABZR88_RS11945 at 2943.833 kb on - strand, within ABZR88_RS11950 at 2943.860 kb on + strand, within ABZR88_RS11950 at 2943.884 kb on + strand, within ABZR88_RS11950 at 2943.931 kb on + strand, within ABZR88_RS11950 at 2943.931 kb on + strand, within ABZR88_RS11950
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 2,941,687 + ABZR88_RS11935 0.79 +0.1 2,941,714 - ABZR88_RS11935 0.81 -2.2 2,941,850 - -0.1 2,941,868 + +0.3 2,941,873 + +0.2 2,941,975 - +0.8 2,942,036 + -0.2 2,942,048 + +0.5 2,942,123 - ABZR88_RS11940 0.20 +0.3 2,942,160 + ABZR88_RS11940 0.26 -0.7 2,942,166 - ABZR88_RS11940 0.26 -0.2 2,942,427 - ABZR88_RS11940 0.64 +1.3 2,942,501 + ABZR88_RS11940 0.74 +0.6 2,942,502 - ABZR88_RS11940 0.74 -1.5 2,942,601 - ABZR88_RS11940 0.88 +1.0 2,942,685 + +1.3 2,943,026 - ABZR88_RS11945 0.87 -1.0 2,943,026 - ABZR88_RS11945 0.87 -1.2 2,943,028 - ABZR88_RS11945 0.88 -1.3 2,943,028 - ABZR88_RS11945 0.88 +1.3 2,943,833 - ABZR88_RS11950 0.73 +0.0 2,943,860 + ABZR88_RS11950 0.76 -0.8 2,943,884 + ABZR88_RS11950 0.79 -0.6 2,943,931 + ABZR88_RS11950 0.85 -0.2 2,943,931 + ABZR88_RS11950 0.85 +0.4
Or see this region's nucleotide sequence