Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS07260 and ABZR88_RS07265 overlap by 4 nucleotides ABZR88_RS07265 and ABZR88_RS07270 are separated by 14 nucleotides
ABZR88_RS07260: ABZR88_RS07260 - alginate lyase family protein, at 1,797,972 to 1,799,036
_RS07260
ABZR88_RS07265: ABZR88_RS07265 - family 16 glycosylhydrolase, at 1,799,033 to 1,799,905
_RS07265
ABZR88_RS07270: ABZR88_RS07270 - glycoside hydrolase family 105 protein, at 1,799,920 to 1,801,056
_RS07270
Position (kb)
1799
1800 Strain fitness (log2 ratio)
-1
0
1 at 1798.088 kb on + strand, within ABZR88_RS07260 at 1798.089 kb on - strand, within ABZR88_RS07260 at 1798.273 kb on - strand, within ABZR88_RS07260 at 1798.313 kb on + strand, within ABZR88_RS07260 at 1798.320 kb on - strand, within ABZR88_RS07260 at 1798.378 kb on + strand, within ABZR88_RS07260 at 1798.400 kb on + strand, within ABZR88_RS07260 at 1798.435 kb on + strand, within ABZR88_RS07260 at 1798.523 kb on - strand, within ABZR88_RS07260 at 1798.577 kb on - strand, within ABZR88_RS07260 at 1798.613 kb on - strand, within ABZR88_RS07260 at 1798.633 kb on + strand, within ABZR88_RS07260 at 1798.656 kb on - strand, within ABZR88_RS07260 at 1798.760 kb on + strand, within ABZR88_RS07260 at 1798.797 kb on + strand, within ABZR88_RS07260 at 1798.933 kb on - strand at 1798.975 kb on - strand at 1798.986 kb on + strand at 1799.015 kb on + strand at 1799.016 kb on - strand at 1799.330 kb on + strand, within ABZR88_RS07265 at 1799.467 kb on + strand, within ABZR88_RS07265 at 1799.710 kb on + strand, within ABZR88_RS07265 at 1799.723 kb on - strand, within ABZR88_RS07265 at 1799.746 kb on - strand, within ABZR88_RS07265 at 1799.880 kb on + strand at 1799.887 kb on - strand at 1799.913 kb on - strand at 1800.139 kb on - strand, within ABZR88_RS07270 at 1800.236 kb on - strand, within ABZR88_RS07270 at 1800.247 kb on + strand, within ABZR88_RS07270 at 1800.251 kb on - strand, within ABZR88_RS07270 at 1800.256 kb on - strand, within ABZR88_RS07270 at 1800.298 kb on - strand, within ABZR88_RS07270 at 1800.339 kb on + strand, within ABZR88_RS07270 at 1800.473 kb on - strand, within ABZR88_RS07270 at 1800.473 kb on - strand, within ABZR88_RS07270 at 1800.494 kb on + strand, within ABZR88_RS07270 at 1800.714 kb on + strand, within ABZR88_RS07270 at 1800.898 kb on - strand, within ABZR88_RS07270
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 1,798,088 + ABZR88_RS07260 0.11 -0.1 1,798,089 - ABZR88_RS07260 0.11 +0.3 1,798,273 - ABZR88_RS07260 0.28 -0.5 1,798,313 + ABZR88_RS07260 0.32 -0.5 1,798,320 - ABZR88_RS07260 0.33 -0.2 1,798,378 + ABZR88_RS07260 0.38 -0.2 1,798,400 + ABZR88_RS07260 0.40 -0.2 1,798,435 + ABZR88_RS07260 0.43 +0.4 1,798,523 - ABZR88_RS07260 0.52 -0.5 1,798,577 - ABZR88_RS07260 0.57 -0.7 1,798,613 - ABZR88_RS07260 0.60 -0.3 1,798,633 + ABZR88_RS07260 0.62 -0.4 1,798,656 - ABZR88_RS07260 0.64 -0.1 1,798,760 + ABZR88_RS07260 0.74 -0.3 1,798,797 + ABZR88_RS07260 0.77 +0.2 1,798,933 - -0.1 1,798,975 - +0.1 1,798,986 + -0.0 1,799,015 + -0.0 1,799,016 - +0.2 1,799,330 + ABZR88_RS07265 0.34 +1.0 1,799,467 + ABZR88_RS07265 0.50 -1.7 1,799,710 + ABZR88_RS07265 0.78 -0.4 1,799,723 - ABZR88_RS07265 0.79 -0.4 1,799,746 - ABZR88_RS07265 0.82 +0.1 1,799,880 + -1.0 1,799,887 - +0.3 1,799,913 - -0.0 1,800,139 - ABZR88_RS07270 0.19 +0.3 1,800,236 - ABZR88_RS07270 0.28 -0.3 1,800,247 + ABZR88_RS07270 0.29 -0.5 1,800,251 - ABZR88_RS07270 0.29 -0.0 1,800,256 - ABZR88_RS07270 0.30 -0.4 1,800,298 - ABZR88_RS07270 0.33 +0.1 1,800,339 + ABZR88_RS07270 0.37 +0.0 1,800,473 - ABZR88_RS07270 0.49 +0.4 1,800,473 - ABZR88_RS07270 0.49 -0.3 1,800,494 + ABZR88_RS07270 0.50 -0.0 1,800,714 + ABZR88_RS07270 0.70 -0.1 1,800,898 - ABZR88_RS07270 0.86 -0.0
Or see this region's nucleotide sequence