Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS05890 and ABZR88_RS05895 are separated by 168 nucleotides ABZR88_RS05895 and ABZR88_RS05900 are separated by 199 nucleotides ABZR88_RS05900 and ABZR88_RS05905 are separated by 227 nucleotides
ABZR88_RS05890: ABZR88_RS05890 - hypothetical protein, at 1,436,931 to 1,437,425
_RS05890
ABZR88_RS05895: ABZR88_RS05895 - helix-turn-helix domain-containing protein, at 1,437,594 to 1,437,920
_RS05895
ABZR88_RS05900: ABZR88_RS05900 - hypothetical protein, at 1,438,120 to 1,438,506
_RS05900
ABZR88_RS05905: ABZR88_RS05905 - MFS transporter, at 1,438,734 to 1,440,053
_RS05905
Position (kb) 1437
1438 Strain fitness (log2 ratio) -1
0
1
2 at 1436.715 kb on - strand at 1436.715 kb on - strand at 1436.913 kb on - strand at 1436.976 kb on - strand at 1437.110 kb on + strand, within ABZR88_RS05890 at 1437.270 kb on - strand, within ABZR88_RS05890 at 1437.275 kb on - strand, within ABZR88_RS05890 at 1437.573 kb on + strand at 1437.595 kb on + strand at 1437.595 kb on + strand at 1437.616 kb on + strand at 1437.697 kb on + strand, within ABZR88_RS05895 at 1437.698 kb on - strand, within ABZR88_RS05895 at 1437.875 kb on + strand, within ABZR88_RS05895 at 1437.909 kb on - strand at 1437.930 kb on - strand at 1438.074 kb on - strand at 1438.244 kb on - strand, within ABZR88_RS05900 at 1438.315 kb on - strand, within ABZR88_RS05900 at 1438.457 kb on - strand, within ABZR88_RS05900 at 1438.600 kb on + strand at 1438.734 kb on - strand at 1438.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 1,436,715 - -0.2 1,436,715 - -0.1 1,436,913 - -0.6 1,436,976 - -0.6 1,437,110 + ABZR88_RS05890 0.36 +0.4 1,437,270 - ABZR88_RS05890 0.68 +0.1 1,437,275 - ABZR88_RS05890 0.69 +0.0 1,437,573 + -0.3 1,437,595 + +0.6 1,437,595 + -0.4 1,437,616 + +0.3 1,437,697 + ABZR88_RS05895 0.31 -0.9 1,437,698 - ABZR88_RS05895 0.32 -0.8 1,437,875 + ABZR88_RS05895 0.86 -0.4 1,437,909 - -1.1 1,437,930 - +0.0 1,438,074 - +1.8 1,438,244 - ABZR88_RS05900 0.32 -0.3 1,438,315 - ABZR88_RS05900 0.50 +0.2 1,438,457 - ABZR88_RS05900 0.87 +0.1 1,438,600 + +0.5 1,438,734 - +0.3 1,438,801 - -0.0
Or see this region's nucleotide sequence