Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS02010 and ABZR88_RS02015 are separated by 179 nucleotides ABZR88_RS02015 and ABZR88_RS02020 are separated by 132 nucleotides ABZR88_RS02020 and ABZR88_RS02025 are separated by 149 nucleotides
ABZR88_RS02010: ABZR88_RS02010 - bifunctional riboflavin kinase/FAD synthetase, at 453,328 to 454,257
_RS02010
ABZR88_RS02015: ABZR88_RS02015 - tRNA pseudouridine(55) synthase TruB, at 454,437 to 455,171
_RS02015
ABZR88_RS02020: ABZR88_RS02020 - hypothetical protein, at 455,304 to 455,852
_RS02020
ABZR88_RS02025: ABZR88_RS02025 - hypothetical protein, at 456,002 to 457,225
_RS02025
Position (kb) 454
455
456 Strain fitness (log2 ratio) -1
0
1 at 454.297 kb on + strand at 454.335 kb on + strand at 454.336 kb on - strand at 454.394 kb on + strand at 454.809 kb on + strand, within ABZR88_RS02015 at 454.810 kb on - strand, within ABZR88_RS02015 at 454.903 kb on + strand, within ABZR88_RS02015 at 455.127 kb on + strand at 455.146 kb on - strand at 455.149 kb on + strand at 455.276 kb on - strand at 455.276 kb on - strand at 455.398 kb on + strand, within ABZR88_RS02020 at 455.401 kb on - strand, within ABZR88_RS02020 at 455.481 kb on + strand, within ABZR88_RS02020 at 455.482 kb on - strand, within ABZR88_RS02020 at 455.482 kb on - strand, within ABZR88_RS02020 at 455.700 kb on + strand, within ABZR88_RS02020 at 455.710 kb on - strand, within ABZR88_RS02020 at 455.746 kb on + strand, within ABZR88_RS02020 at 455.905 kb on - strand at 455.907 kb on + strand at 455.907 kb on + strand at 455.908 kb on - strand at 456.087 kb on + strand at 456.088 kb on - strand at 456.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 454,297 + -0.3 454,335 + +0.2 454,336 - +0.2 454,394 + +0.1 454,809 + ABZR88_RS02015 0.51 -0.5 454,810 - ABZR88_RS02015 0.51 -0.9 454,903 + ABZR88_RS02015 0.63 -0.3 455,127 + -0.2 455,146 - +0.5 455,149 + -0.1 455,276 - +0.2 455,276 - -1.0 455,398 + ABZR88_RS02020 0.17 -0.2 455,401 - ABZR88_RS02020 0.18 -0.2 455,481 + ABZR88_RS02020 0.32 -0.3 455,482 - ABZR88_RS02020 0.32 +0.7 455,482 - ABZR88_RS02020 0.32 -1.1 455,700 + ABZR88_RS02020 0.72 +0.8 455,710 - ABZR88_RS02020 0.74 +0.4 455,746 + ABZR88_RS02020 0.81 +0.1 455,905 - +0.5 455,907 + -0.2 455,907 + -0.0 455,908 - +0.2 456,087 + -0.2 456,088 - +0.0 456,092 - +0.0
Or see this region's nucleotide sequence