Experiment: Trimethoprim stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS00380 and ABZR88_RS00385 are separated by 228 nucleotides ABZR88_RS00385 and ABZR88_RS00390 are separated by 213 nucleotides
ABZR88_RS00380: ABZR88_RS00380 - DNA mismatch repair endonuclease MutL, at 76,146 to 78,011
_RS00380
ABZR88_RS00385: ABZR88_RS00385 - hypothetical protein, at 78,240 to 79,097
_RS00385
ABZR88_RS00390: ABZR88_RS00390 - amidohydrolase, at 79,311 to 80,954
_RS00390
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1 at 77.553 kb on - strand, within ABZR88_RS00380 at 77.997 kb on + strand at 78.097 kb on - strand at 78.271 kb on - strand at 78.292 kb on + strand at 78.341 kb on + strand, within ABZR88_RS00385 at 78.360 kb on + strand, within ABZR88_RS00385 at 78.361 kb on - strand, within ABZR88_RS00385 at 78.365 kb on + strand, within ABZR88_RS00385 at 78.525 kb on + strand, within ABZR88_RS00385 at 78.540 kb on - strand, within ABZR88_RS00385 at 78.543 kb on + strand, within ABZR88_RS00385 at 78.567 kb on + strand, within ABZR88_RS00385 at 78.575 kb on + strand, within ABZR88_RS00385 at 78.584 kb on - strand, within ABZR88_RS00385 at 78.700 kb on - strand, within ABZR88_RS00385 at 78.789 kb on - strand, within ABZR88_RS00385 at 78.985 kb on - strand, within ABZR88_RS00385 at 79.030 kb on + strand at 79.118 kb on + strand at 79.123 kb on + strand at 79.123 kb on + strand at 79.136 kb on - strand at 79.157 kb on - strand at 79.248 kb on - strand at 79.258 kb on - strand at 79.269 kb on - strand at 79.276 kb on + strand at 79.448 kb on + strand at 79.950 kb on - strand, within ABZR88_RS00390 at 80.006 kb on + strand, within ABZR88_RS00390 at 80.072 kb on + strand, within ABZR88_RS00390 at 80.072 kb on + strand, within ABZR88_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction Trimethoprim stress 0.05 mg/ml remove 77,553 - ABZR88_RS00380 0.75 +0.6 77,997 + +0.3 78,097 - -0.3 78,271 - +0.7 78,292 + -0.4 78,341 + ABZR88_RS00385 0.12 -0.2 78,360 + ABZR88_RS00385 0.14 -0.0 78,361 - ABZR88_RS00385 0.14 -0.1 78,365 + ABZR88_RS00385 0.15 -0.1 78,525 + ABZR88_RS00385 0.33 +0.1 78,540 - ABZR88_RS00385 0.35 +0.0 78,543 + ABZR88_RS00385 0.35 -0.4 78,567 + ABZR88_RS00385 0.38 -0.2 78,575 + ABZR88_RS00385 0.39 +1.1 78,584 - ABZR88_RS00385 0.40 +0.3 78,700 - ABZR88_RS00385 0.54 -0.2 78,789 - ABZR88_RS00385 0.64 +0.4 78,985 - ABZR88_RS00385 0.87 +0.4 79,030 + -0.1 79,118 + +0.4 79,123 + +0.0 79,123 + -0.0 79,136 - +0.4 79,157 - +0.2 79,248 - +0.1 79,258 - +0.6 79,269 - +0.9 79,276 + -0.2 79,448 + -0.2 79,950 - ABZR88_RS00390 0.39 +0.1 80,006 + ABZR88_RS00390 0.42 +0.2 80,072 + ABZR88_RS00390 0.46 +0.4 80,072 + ABZR88_RS00390 0.46 +0.3
Or see this region's nucleotide sequence