Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS14080

Experiment: Kanamycin sulfate stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS14070 and ABZR88_RS14075 are separated by 118 nucleotidesABZR88_RS14075 and ABZR88_RS14080 are separated by 5 nucleotidesABZR88_RS14080 and ABZR88_RS14085 are separated by 198 nucleotidesABZR88_RS14085 and ABZR88_RS14090 are separated by 21 nucleotidesABZR88_RS14090 and ABZR88_RS14095 overlap by 1 nucleotides ABZR88_RS14070: ABZR88_RS14070 - phosphoglucosamine mutase, at 3,498,569 to 3,499,957 _RS14070 ABZR88_RS14075: ABZR88_RS14075 - phosphatase PAP2 family protein, at 3,500,076 to 3,500,639 _RS14075 ABZR88_RS14080: ABZR88_RS14080 - ZIP family metal transporter, at 3,500,645 to 3,501,367 _RS14080 ABZR88_RS14085: ABZR88_RS14085 - MarR family winged helix-turn-helix transcriptional regulator, at 3,501,566 to 3,502,018 _RS14085 ABZR88_RS14090: ABZR88_RS14090 - DUF5522 domain-containing protein, at 3,502,040 to 3,502,219 _RS14090 ABZR88_RS14095: ABZR88_RS14095 - MBL fold metallo-hydrolase, at 3,502,219 to 3,503,157 _RS14095 Position (kb) 3500 3501 3502Strain fitness (log2 ratio) -1 0 1at 3499.963 kb on - strandat 3499.969 kb on - strandat 3499.996 kb on - strandat 3499.997 kb on + strandat 3499.998 kb on - strandat 3500.052 kb on + strandat 3501.025 kb on - strand, within ABZR88_RS14080at 3501.460 kb on + strandat 3501.461 kb on - strandat 3501.522 kb on - strandat 3501.580 kb on + strandat 3501.707 kb on + strand, within ABZR88_RS14085at 3501.771 kb on - strand, within ABZR88_RS14085at 3501.969 kb on + strand, within ABZR88_RS14085at 3502.193 kb on - strand, within ABZR88_RS14090at 3502.198 kb on - strand, within ABZR88_RS14090at 3502.204 kb on + strandat 3502.268 kb on + strandat 3502.318 kb on + strand, within ABZR88_RS14095at 3502.333 kb on - strand, within ABZR88_RS14095

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Per-strain Table

Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml
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3,499,963 - -0.7
3,499,969 - +0.0
3,499,996 - -0.2
3,499,997 + +0.0
3,499,998 - -0.5
3,500,052 + -0.7
3,501,025 - ABZR88_RS14080 0.53 -0.8
3,501,460 + -0.3
3,501,461 - +0.1
3,501,522 - -0.0
3,501,580 + -1.0
3,501,707 + ABZR88_RS14085 0.31 -0.8
3,501,771 - ABZR88_RS14085 0.45 -1.2
3,501,969 + ABZR88_RS14085 0.89 -1.0
3,502,193 - ABZR88_RS14090 0.85 -0.1
3,502,198 - ABZR88_RS14090 0.88 -0.4
3,502,204 + -0.3
3,502,268 + +0.1
3,502,318 + ABZR88_RS14095 0.11 +0.0
3,502,333 - ABZR88_RS14095 0.12 -0.9

Or see this region's nucleotide sequence