Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12055

Experiment: Kanamycin sulfate stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12050 and ABZR88_RS12055 are separated by 219 nucleotidesABZR88_RS12055 and ABZR88_RS12060 are separated by 75 nucleotidesABZR88_RS12060 and ABZR88_RS12065 are separated by 6 nucleotidesABZR88_RS12065 and ABZR88_RS12070 are separated by 6 nucleotides ABZR88_RS12050: ABZR88_RS12050 - ABC-F family ATP-binding cassette domain-containing protein, at 2,962,466 to 2,964,382 _RS12050 ABZR88_RS12055: ABZR88_RS12055 - DUF1345 domain-containing protein, at 2,964,602 to 2,965,279 _RS12055 ABZR88_RS12060: ABZR88_RS12060 - YwbE family protein, at 2,965,355 to 2,965,555 _RS12060 ABZR88_RS12065: ABZR88_RS12065 - HAD domain-containing protein, at 2,965,562 to 2,966,020 _RS12065 ABZR88_RS12070: ABZR88_RS12070 - argininosuccinate lyase, at 2,966,027 to 2,967,361 _RS12070 Position (kb) 2964 2965 2966Strain fitness (log2 ratio) -1 0 1at 2963.659 kb on - strand, within ABZR88_RS12050at 2963.897 kb on - strand, within ABZR88_RS12050at 2964.030 kb on - strand, within ABZR88_RS12050at 2964.073 kb on + strand, within ABZR88_RS12050at 2964.507 kb on + strandat 2964.655 kb on + strandat 2964.693 kb on - strand, within ABZR88_RS12055at 2964.827 kb on - strand, within ABZR88_RS12055at 2965.040 kb on - strand, within ABZR88_RS12055at 2965.155 kb on - strand, within ABZR88_RS12055at 2965.201 kb on + strand, within ABZR88_RS12055at 2965.347 kb on - strandat 2965.349 kb on - strandat 2965.357 kb on - strandat 2965.357 kb on - strandat 2965.647 kb on + strand, within ABZR88_RS12065at 2965.648 kb on - strand, within ABZR88_RS12065at 2965.648 kb on - strand, within ABZR88_RS12065at 2965.692 kb on + strand, within ABZR88_RS12065at 2965.738 kb on + strand, within ABZR88_RS12065at 2965.865 kb on - strand, within ABZR88_RS12065at 2965.956 kb on - strand, within ABZR88_RS12065at 2966.028 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml
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2,963,659 - ABZR88_RS12050 0.62 -1.5
2,963,897 - ABZR88_RS12050 0.75 -0.3
2,964,030 - ABZR88_RS12050 0.82 -0.2
2,964,073 + ABZR88_RS12050 0.84 -0.1
2,964,507 + -0.2
2,964,655 + -0.1
2,964,693 - ABZR88_RS12055 0.13 +0.1
2,964,827 - ABZR88_RS12055 0.33 -0.2
2,965,040 - ABZR88_RS12055 0.65 -1.7
2,965,155 - ABZR88_RS12055 0.82 -0.0
2,965,201 + ABZR88_RS12055 0.88 -0.2
2,965,347 - -0.0
2,965,349 - -0.4
2,965,357 - -0.0
2,965,357 - +0.1
2,965,647 + ABZR88_RS12065 0.19 +0.1
2,965,648 - ABZR88_RS12065 0.19 -0.1
2,965,648 - ABZR88_RS12065 0.19 -0.3
2,965,692 + ABZR88_RS12065 0.28 -0.0
2,965,738 + ABZR88_RS12065 0.38 -0.4
2,965,865 - ABZR88_RS12065 0.66 -0.2
2,965,956 - ABZR88_RS12065 0.86 +0.1
2,966,028 + +0.1

Or see this region's nucleotide sequence