Experiment: Kanamycin sulfate stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12050 and ABZR88_RS12055 are separated by 219 nucleotides ABZR88_RS12055 and ABZR88_RS12060 are separated by 75 nucleotides ABZR88_RS12060 and ABZR88_RS12065 are separated by 6 nucleotides ABZR88_RS12065 and ABZR88_RS12070 are separated by 6 nucleotides
ABZR88_RS12050: ABZR88_RS12050 - ABC-F family ATP-binding cassette domain-containing protein, at 2,962,466 to 2,964,382
_RS12050
ABZR88_RS12055: ABZR88_RS12055 - DUF1345 domain-containing protein, at 2,964,602 to 2,965,279
_RS12055
ABZR88_RS12060: ABZR88_RS12060 - YwbE family protein, at 2,965,355 to 2,965,555
_RS12060
ABZR88_RS12065: ABZR88_RS12065 - HAD domain-containing protein, at 2,965,562 to 2,966,020
_RS12065
ABZR88_RS12070: ABZR88_RS12070 - argininosuccinate lyase, at 2,966,027 to 2,967,361
_RS12070
Position (kb)
2964
2965
2966 Strain fitness (log2 ratio)
-1
0
1 at 2963.659 kb on - strand, within ABZR88_RS12050 at 2963.897 kb on - strand, within ABZR88_RS12050 at 2964.030 kb on - strand, within ABZR88_RS12050 at 2964.073 kb on + strand, within ABZR88_RS12050 at 2964.507 kb on + strand at 2964.655 kb on + strand at 2964.693 kb on - strand, within ABZR88_RS12055 at 2964.827 kb on - strand, within ABZR88_RS12055 at 2965.040 kb on - strand, within ABZR88_RS12055 at 2965.155 kb on - strand, within ABZR88_RS12055 at 2965.201 kb on + strand, within ABZR88_RS12055 at 2965.347 kb on - strand at 2965.349 kb on - strand at 2965.357 kb on - strand at 2965.357 kb on - strand at 2965.647 kb on + strand, within ABZR88_RS12065 at 2965.648 kb on - strand, within ABZR88_RS12065 at 2965.648 kb on - strand, within ABZR88_RS12065 at 2965.692 kb on + strand, within ABZR88_RS12065 at 2965.738 kb on + strand, within ABZR88_RS12065 at 2965.865 kb on - strand, within ABZR88_RS12065 at 2965.956 kb on - strand, within ABZR88_RS12065 at 2966.028 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml remove 2,963,659 - ABZR88_RS12050 0.62 -1.5 2,963,897 - ABZR88_RS12050 0.75 -0.3 2,964,030 - ABZR88_RS12050 0.82 -0.2 2,964,073 + ABZR88_RS12050 0.84 -0.1 2,964,507 + -0.2 2,964,655 + -0.1 2,964,693 - ABZR88_RS12055 0.13 +0.1 2,964,827 - ABZR88_RS12055 0.33 -0.2 2,965,040 - ABZR88_RS12055 0.65 -1.7 2,965,155 - ABZR88_RS12055 0.82 -0.0 2,965,201 + ABZR88_RS12055 0.88 -0.2 2,965,347 - -0.0 2,965,349 - -0.4 2,965,357 - -0.0 2,965,357 - +0.1 2,965,647 + ABZR88_RS12065 0.19 +0.1 2,965,648 - ABZR88_RS12065 0.19 -0.1 2,965,648 - ABZR88_RS12065 0.19 -0.3 2,965,692 + ABZR88_RS12065 0.28 -0.0 2,965,738 + ABZR88_RS12065 0.38 -0.4 2,965,865 - ABZR88_RS12065 0.66 -0.2 2,965,956 - ABZR88_RS12065 0.86 +0.1 2,966,028 + +0.1
Or see this region's nucleotide sequence