Experiment: Kanamycin sulfate stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS09695 and ABZR88_RS09700 are separated by 449 nucleotides ABZR88_RS09700 and ABZR88_RS09705 are separated by 281 nucleotides ABZR88_RS09705 and ABZR88_RS09710 are separated by 330 nucleotides ABZR88_RS09710 and ABZR88_RS09715 are separated by 38 nucleotides
ABZR88_RS09695: ABZR88_RS09695 - hypothetical protein, at 2,421,786 to 2,422,109
_RS09695
ABZR88_RS09700: ABZR88_RS09700 - hypothetical protein, at 2,422,559 to 2,422,789
_RS09700
ABZR88_RS09705: ABZR88_RS09705 - helix-turn-helix domain-containing protein, at 2,423,071 to 2,423,706
_RS09705
ABZR88_RS09710: ABZR88_RS09710 - hypothetical protein, at 2,424,037 to 2,424,567
_RS09710
ABZR88_RS09715: ABZR88_RS09715 - site-specific integrase, at 2,424,606 to 2,425,775
_RS09715
Position (kb)
2423
2424 Strain fitness (log2 ratio)
-1
0
1 at 2422.099 kb on - strand at 2422.177 kb on + strand at 2422.260 kb on + strand at 2422.321 kb on + strand at 2422.338 kb on + strand at 2422.338 kb on + strand at 2422.338 kb on + strand at 2422.520 kb on - strand at 2422.561 kb on - strand at 2422.583 kb on + strand, within ABZR88_RS09700 at 2422.590 kb on + strand, within ABZR88_RS09700 at 2422.713 kb on - strand, within ABZR88_RS09700 at 2422.735 kb on + strand, within ABZR88_RS09700 at 2422.735 kb on + strand, within ABZR88_RS09700 at 2422.832 kb on + strand at 2422.858 kb on - strand at 2422.862 kb on - strand at 2422.868 kb on + strand at 2422.897 kb on + strand at 2422.920 kb on - strand at 2423.125 kb on - strand at 2423.158 kb on + strand, within ABZR88_RS09705 at 2423.159 kb on - strand, within ABZR88_RS09705 at 2423.161 kb on - strand, within ABZR88_RS09705 at 2423.300 kb on + strand, within ABZR88_RS09705 at 2423.301 kb on - strand, within ABZR88_RS09705 at 2423.329 kb on - strand, within ABZR88_RS09705 at 2423.337 kb on + strand, within ABZR88_RS09705 at 2423.451 kb on + strand, within ABZR88_RS09705 at 2423.557 kb on + strand, within ABZR88_RS09705 at 2423.571 kb on + strand, within ABZR88_RS09705 at 2423.639 kb on - strand, within ABZR88_RS09705 at 2423.683 kb on - strand at 2423.701 kb on - strand at 2423.704 kb on + strand at 2423.749 kb on - strand at 2423.752 kb on - strand at 2423.791 kb on - strand at 2423.880 kb on + strand at 2423.883 kb on + strand at 2424.011 kb on + strand at 2424.097 kb on + strand, within ABZR88_RS09710 at 2424.170 kb on - strand, within ABZR88_RS09710 at 2424.170 kb on - strand, within ABZR88_RS09710 at 2424.513 kb on + strand, within ABZR88_RS09710 at 2424.527 kb on - strand at 2424.528 kb on + strand at 2424.570 kb on - strand at 2424.702 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml remove 2,422,099 - +0.0 2,422,177 + -0.3 2,422,260 + +0.0 2,422,321 + +0.1 2,422,338 + +0.0 2,422,338 + +1.2 2,422,338 + +0.4 2,422,520 - -0.1 2,422,561 - -0.3 2,422,583 + ABZR88_RS09700 0.10 -0.3 2,422,590 + ABZR88_RS09700 0.13 -0.2 2,422,713 - ABZR88_RS09700 0.67 -0.0 2,422,735 + ABZR88_RS09700 0.76 +0.0 2,422,735 + ABZR88_RS09700 0.76 -0.0 2,422,832 + -0.0 2,422,858 - -0.1 2,422,862 - +0.4 2,422,868 + -0.1 2,422,897 + +0.0 2,422,920 - -0.3 2,423,125 - +0.5 2,423,158 + ABZR88_RS09705 0.14 +0.0 2,423,159 - ABZR88_RS09705 0.14 -0.1 2,423,161 - ABZR88_RS09705 0.14 +0.0 2,423,300 + ABZR88_RS09705 0.36 +0.4 2,423,301 - ABZR88_RS09705 0.36 -0.1 2,423,329 - ABZR88_RS09705 0.41 -0.0 2,423,337 + ABZR88_RS09705 0.42 -0.2 2,423,451 + ABZR88_RS09705 0.60 -0.8 2,423,557 + ABZR88_RS09705 0.76 +0.2 2,423,571 + ABZR88_RS09705 0.79 -0.1 2,423,639 - ABZR88_RS09705 0.89 -0.1 2,423,683 - +0.2 2,423,701 - +0.1 2,423,704 + -0.1 2,423,749 - +0.1 2,423,752 - -0.0 2,423,791 - -0.6 2,423,880 + +0.1 2,423,883 + +0.2 2,424,011 + -0.1 2,424,097 + ABZR88_RS09710 0.11 +0.0 2,424,170 - ABZR88_RS09710 0.25 -0.1 2,424,170 - ABZR88_RS09710 0.25 -0.1 2,424,513 + ABZR88_RS09710 0.90 -0.6 2,424,527 - -0.4 2,424,528 + -0.0 2,424,570 - -0.4 2,424,702 + +0.0
Or see this region's nucleotide sequence