Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS09705

Experiment: Kanamycin sulfate stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS09695 and ABZR88_RS09700 are separated by 449 nucleotidesABZR88_RS09700 and ABZR88_RS09705 are separated by 281 nucleotidesABZR88_RS09705 and ABZR88_RS09710 are separated by 330 nucleotidesABZR88_RS09710 and ABZR88_RS09715 are separated by 38 nucleotides ABZR88_RS09695: ABZR88_RS09695 - hypothetical protein, at 2,421,786 to 2,422,109 _RS09695 ABZR88_RS09700: ABZR88_RS09700 - hypothetical protein, at 2,422,559 to 2,422,789 _RS09700 ABZR88_RS09705: ABZR88_RS09705 - helix-turn-helix domain-containing protein, at 2,423,071 to 2,423,706 _RS09705 ABZR88_RS09710: ABZR88_RS09710 - hypothetical protein, at 2,424,037 to 2,424,567 _RS09710 ABZR88_RS09715: ABZR88_RS09715 - site-specific integrase, at 2,424,606 to 2,425,775 _RS09715 Position (kb) 2423 2424Strain fitness (log2 ratio) -1 0 1at 2422.099 kb on - strandat 2422.177 kb on + strandat 2422.260 kb on + strandat 2422.321 kb on + strandat 2422.338 kb on + strandat 2422.338 kb on + strandat 2422.338 kb on + strandat 2422.520 kb on - strandat 2422.561 kb on - strandat 2422.583 kb on + strand, within ABZR88_RS09700at 2422.590 kb on + strand, within ABZR88_RS09700at 2422.713 kb on - strand, within ABZR88_RS09700at 2422.735 kb on + strand, within ABZR88_RS09700at 2422.735 kb on + strand, within ABZR88_RS09700at 2422.832 kb on + strandat 2422.858 kb on - strandat 2422.862 kb on - strandat 2422.868 kb on + strandat 2422.897 kb on + strandat 2422.920 kb on - strandat 2423.125 kb on - strandat 2423.158 kb on + strand, within ABZR88_RS09705at 2423.159 kb on - strand, within ABZR88_RS09705at 2423.161 kb on - strand, within ABZR88_RS09705at 2423.300 kb on + strand, within ABZR88_RS09705at 2423.301 kb on - strand, within ABZR88_RS09705at 2423.329 kb on - strand, within ABZR88_RS09705at 2423.337 kb on + strand, within ABZR88_RS09705at 2423.451 kb on + strand, within ABZR88_RS09705at 2423.557 kb on + strand, within ABZR88_RS09705at 2423.571 kb on + strand, within ABZR88_RS09705at 2423.639 kb on - strand, within ABZR88_RS09705at 2423.683 kb on - strandat 2423.701 kb on - strandat 2423.704 kb on + strandat 2423.749 kb on - strandat 2423.752 kb on - strandat 2423.791 kb on - strandat 2423.880 kb on + strandat 2423.883 kb on + strandat 2424.011 kb on + strandat 2424.097 kb on + strand, within ABZR88_RS09710at 2424.170 kb on - strand, within ABZR88_RS09710at 2424.170 kb on - strand, within ABZR88_RS09710at 2424.513 kb on + strand, within ABZR88_RS09710at 2424.527 kb on - strandat 2424.528 kb on + strandat 2424.570 kb on - strandat 2424.702 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Kanamycin sulfate stress 0.05 mg/ml
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2,422,099 - +0.0
2,422,177 + -0.3
2,422,260 + +0.0
2,422,321 + +0.1
2,422,338 + +0.0
2,422,338 + +1.2
2,422,338 + +0.4
2,422,520 - -0.1
2,422,561 - -0.3
2,422,583 + ABZR88_RS09700 0.10 -0.3
2,422,590 + ABZR88_RS09700 0.13 -0.2
2,422,713 - ABZR88_RS09700 0.67 -0.0
2,422,735 + ABZR88_RS09700 0.76 +0.0
2,422,735 + ABZR88_RS09700 0.76 -0.0
2,422,832 + -0.0
2,422,858 - -0.1
2,422,862 - +0.4
2,422,868 + -0.1
2,422,897 + +0.0
2,422,920 - -0.3
2,423,125 - +0.5
2,423,158 + ABZR88_RS09705 0.14 +0.0
2,423,159 - ABZR88_RS09705 0.14 -0.1
2,423,161 - ABZR88_RS09705 0.14 +0.0
2,423,300 + ABZR88_RS09705 0.36 +0.4
2,423,301 - ABZR88_RS09705 0.36 -0.1
2,423,329 - ABZR88_RS09705 0.41 -0.0
2,423,337 + ABZR88_RS09705 0.42 -0.2
2,423,451 + ABZR88_RS09705 0.60 -0.8
2,423,557 + ABZR88_RS09705 0.76 +0.2
2,423,571 + ABZR88_RS09705 0.79 -0.1
2,423,639 - ABZR88_RS09705 0.89 -0.1
2,423,683 - +0.2
2,423,701 - +0.1
2,423,704 + -0.1
2,423,749 - +0.1
2,423,752 - -0.0
2,423,791 - -0.6
2,423,880 + +0.1
2,423,883 + +0.2
2,424,011 + -0.1
2,424,097 + ABZR88_RS09710 0.11 +0.0
2,424,170 - ABZR88_RS09710 0.25 -0.1
2,424,170 - ABZR88_RS09710 0.25 -0.1
2,424,513 + ABZR88_RS09710 0.90 -0.6
2,424,527 - -0.4
2,424,528 + -0.0
2,424,570 - -0.4
2,424,702 + +0.0

Or see this region's nucleotide sequence