Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS18980

Experiment: Quercetin stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS18975 and ABZR88_RS18980 overlap by 4 nucleotidesABZR88_RS18980 and ABZR88_RS18985 are separated by 360 nucleotides ABZR88_RS18975: ABZR88_RS18975 - glucose-1-phosphate adenylyltransferase, at 4,636,230 to 4,637,492 _RS18975 ABZR88_RS18980: ABZR88_RS18980 - glycogen synthase, at 4,637,489 to 4,638,913 _RS18980 ABZR88_RS18985: ABZR88_RS18985 - M28 family peptidase, at 4,639,274 to 4,640,857 _RS18985 Position (kb) 4637 4638 4639Strain fitness (log2 ratio) -1 0 1at 4636.551 kb on - strand, within ABZR88_RS18975at 4636.569 kb on - strand, within ABZR88_RS18975at 4636.569 kb on - strand, within ABZR88_RS18975at 4636.872 kb on - strand, within ABZR88_RS18975at 4637.366 kb on + strandat 4637.372 kb on + strandat 4637.493 kb on - strandat 4637.671 kb on + strand, within ABZR88_RS18980at 4638.187 kb on + strand, within ABZR88_RS18980at 4638.265 kb on + strand, within ABZR88_RS18980at 4638.266 kb on - strand, within ABZR88_RS18980at 4638.414 kb on + strand, within ABZR88_RS18980at 4638.466 kb on - strand, within ABZR88_RS18980at 4638.609 kb on + strand, within ABZR88_RS18980at 4638.609 kb on + strand, within ABZR88_RS18980at 4638.620 kb on - strand, within ABZR88_RS18980at 4638.903 kb on + strandat 4639.089 kb on + strandat 4639.107 kb on + strandat 4639.169 kb on + strandat 4639.173 kb on + strandat 4639.173 kb on + strandat 4639.250 kb on - strandat 4639.423 kb on - strandat 4639.531 kb on - strand, within ABZR88_RS18985at 4639.556 kb on - strand, within ABZR88_RS18985at 4639.685 kb on + strand, within ABZR88_RS18985at 4639.687 kb on + strand, within ABZR88_RS18985

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Per-strain Table

Position Strand Gene LocusTag Fraction Quercetin stress 0.05 mg/ml
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4,636,551 - ABZR88_RS18975 0.25 +0.3
4,636,569 - ABZR88_RS18975 0.27 +0.4
4,636,569 - ABZR88_RS18975 0.27 +0.4
4,636,872 - ABZR88_RS18975 0.51 -1.3
4,637,366 + +0.1
4,637,372 + +0.7
4,637,493 - +0.5
4,637,671 + ABZR88_RS18980 0.13 +0.5
4,638,187 + ABZR88_RS18980 0.49 +1.2
4,638,265 + ABZR88_RS18980 0.54 +0.1
4,638,266 - ABZR88_RS18980 0.55 +0.1
4,638,414 + ABZR88_RS18980 0.65 +1.0
4,638,466 - ABZR88_RS18980 0.69 +0.7
4,638,609 + ABZR88_RS18980 0.79 +0.4
4,638,609 + ABZR88_RS18980 0.79 +0.8
4,638,620 - ABZR88_RS18980 0.79 -0.5
4,638,903 + -0.1
4,639,089 + -0.2
4,639,107 + -0.1
4,639,169 + +0.1
4,639,173 + -0.7
4,639,173 + +0.2
4,639,250 - -0.1
4,639,423 - -0.1
4,639,531 - ABZR88_RS18985 0.16 -0.4
4,639,556 - ABZR88_RS18985 0.18 -0.2
4,639,685 + ABZR88_RS18985 0.26 +0.3
4,639,687 + ABZR88_RS18985 0.26 +0.2

Or see this region's nucleotide sequence