Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12560

Experiment: Quercetin stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS12550 and ABZR88_RS12555 are separated by 382 nucleotidesABZR88_RS12555 and ABZR88_RS12560 are separated by 50 nucleotidesABZR88_RS12560 and ABZR88_RS12565 are separated by 2 nucleotidesABZR88_RS12565 and ABZR88_RS12570 overlap by 14 nucleotides ABZR88_RS12550: ABZR88_RS12550 - efflux transporter outer membrane subunit, at 3,091,999 to 3,093,411 _RS12550 ABZR88_RS12555: ABZR88_RS12555 - response regulator transcription factor, at 3,093,794 to 3,094,165 _RS12555 ABZR88_RS12560: ABZR88_RS12560 - glycosyltransferase family 2 protein, at 3,094,216 to 3,094,947 _RS12560 ABZR88_RS12565: ABZR88_RS12565 - DUF2304 domain-containing protein, at 3,094,950 to 3,095,306 _RS12565 ABZR88_RS12570: ABZR88_RS12570 - lipopolysaccharide assembly protein LapB, at 3,095,293 to 3,097,320 _RS12570 Position (kb) 3094 3095Strain fitness (log2 ratio) -1 0 1at 3093.599 kb on + strandat 3093.697 kb on + strandat 3093.786 kb on - strandat 3093.982 kb on + strand, within ABZR88_RS12555at 3093.992 kb on + strand, within ABZR88_RS12555at 3093.992 kb on + strand, within ABZR88_RS12555at 3093.997 kb on + strand, within ABZR88_RS12555at 3094.021 kb on + strand, within ABZR88_RS12555at 3094.248 kb on - strandat 3094.248 kb on - strandat 3094.257 kb on + strandat 3094.267 kb on + strandat 3094.268 kb on - strandat 3094.356 kb on - strand, within ABZR88_RS12560at 3094.377 kb on + strand, within ABZR88_RS12560at 3094.378 kb on - strand, within ABZR88_RS12560at 3094.412 kb on + strand, within ABZR88_RS12560at 3094.548 kb on - strand, within ABZR88_RS12560at 3094.558 kb on + strand, within ABZR88_RS12560at 3094.768 kb on + strand, within ABZR88_RS12560at 3094.785 kb on + strand, within ABZR88_RS12560at 3094.886 kb on + strandat 3094.892 kb on - strandat 3094.892 kb on - strandat 3094.946 kb on - strandat 3094.980 kb on - strandat 3095.043 kb on + strand, within ABZR88_RS12565at 3095.062 kb on + strand, within ABZR88_RS12565at 3095.180 kb on + strand, within ABZR88_RS12565at 3095.343 kb on - strandat 3095.540 kb on - strand, within ABZR88_RS12570at 3095.760 kb on - strand, within ABZR88_RS12570at 3095.860 kb on - strand, within ABZR88_RS12570at 3095.885 kb on + strand, within ABZR88_RS12570at 3095.927 kb on + strand, within ABZR88_RS12570

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Per-strain Table

Position Strand Gene LocusTag Fraction Quercetin stress 0.05 mg/ml
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3,093,599 + +0.1
3,093,697 + +0.1
3,093,786 - -1.3
3,093,982 + ABZR88_RS12555 0.51 +0.3
3,093,992 + ABZR88_RS12555 0.53 +0.1
3,093,992 + ABZR88_RS12555 0.53 +0.0
3,093,997 + ABZR88_RS12555 0.55 -0.7
3,094,021 + ABZR88_RS12555 0.61 -0.0
3,094,248 - -0.2
3,094,248 - -0.0
3,094,257 + +0.3
3,094,267 + +0.2
3,094,268 - +0.2
3,094,356 - ABZR88_RS12560 0.19 +0.1
3,094,377 + ABZR88_RS12560 0.22 +0.0
3,094,378 - ABZR88_RS12560 0.22 -0.2
3,094,412 + ABZR88_RS12560 0.27 +0.1
3,094,548 - ABZR88_RS12560 0.45 -0.2
3,094,558 + ABZR88_RS12560 0.47 +0.0
3,094,768 + ABZR88_RS12560 0.75 +0.1
3,094,785 + ABZR88_RS12560 0.78 +0.3
3,094,886 + -0.1
3,094,892 - -0.2
3,094,892 - -0.1
3,094,946 - +0.1
3,094,980 - +0.3
3,095,043 + ABZR88_RS12565 0.26 +0.1
3,095,062 + ABZR88_RS12565 0.31 -0.1
3,095,180 + ABZR88_RS12565 0.64 +0.1
3,095,343 - +0.1
3,095,540 - ABZR88_RS12570 0.12 -0.1
3,095,760 - ABZR88_RS12570 0.23 -0.3
3,095,860 - ABZR88_RS12570 0.28 -0.3
3,095,885 + ABZR88_RS12570 0.29 -0.3
3,095,927 + ABZR88_RS12570 0.31 +0.3

Or see this region's nucleotide sequence