Experiment: Quercetin stress 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12550 and ABZR88_RS12555 are separated by 382 nucleotides ABZR88_RS12555 and ABZR88_RS12560 are separated by 50 nucleotides ABZR88_RS12560 and ABZR88_RS12565 are separated by 2 nucleotides ABZR88_RS12565 and ABZR88_RS12570 overlap by 14 nucleotides
ABZR88_RS12550: ABZR88_RS12550 - efflux transporter outer membrane subunit, at 3,091,999 to 3,093,411
_RS12550
ABZR88_RS12555: ABZR88_RS12555 - response regulator transcription factor, at 3,093,794 to 3,094,165
_RS12555
ABZR88_RS12560: ABZR88_RS12560 - glycosyltransferase family 2 protein, at 3,094,216 to 3,094,947
_RS12560
ABZR88_RS12565: ABZR88_RS12565 - DUF2304 domain-containing protein, at 3,094,950 to 3,095,306
_RS12565
ABZR88_RS12570: ABZR88_RS12570 - lipopolysaccharide assembly protein LapB, at 3,095,293 to 3,097,320
_RS12570
Position (kb)
3094
3095 Strain fitness (log2 ratio)
-1
0
1 at 3093.599 kb on + strand at 3093.697 kb on + strand at 3093.786 kb on - strand at 3093.982 kb on + strand, within ABZR88_RS12555 at 3093.992 kb on + strand, within ABZR88_RS12555 at 3093.992 kb on + strand, within ABZR88_RS12555 at 3093.997 kb on + strand, within ABZR88_RS12555 at 3094.021 kb on + strand, within ABZR88_RS12555 at 3094.248 kb on - strand at 3094.248 kb on - strand at 3094.257 kb on + strand at 3094.267 kb on + strand at 3094.268 kb on - strand at 3094.356 kb on - strand, within ABZR88_RS12560 at 3094.377 kb on + strand, within ABZR88_RS12560 at 3094.378 kb on - strand, within ABZR88_RS12560 at 3094.412 kb on + strand, within ABZR88_RS12560 at 3094.548 kb on - strand, within ABZR88_RS12560 at 3094.558 kb on + strand, within ABZR88_RS12560 at 3094.768 kb on + strand, within ABZR88_RS12560 at 3094.785 kb on + strand, within ABZR88_RS12560 at 3094.886 kb on + strand at 3094.892 kb on - strand at 3094.892 kb on - strand at 3094.946 kb on - strand at 3094.980 kb on - strand at 3095.043 kb on + strand, within ABZR88_RS12565 at 3095.062 kb on + strand, within ABZR88_RS12565 at 3095.180 kb on + strand, within ABZR88_RS12565 at 3095.343 kb on - strand at 3095.540 kb on - strand, within ABZR88_RS12570 at 3095.760 kb on - strand, within ABZR88_RS12570 at 3095.860 kb on - strand, within ABZR88_RS12570 at 3095.885 kb on + strand, within ABZR88_RS12570 at 3095.927 kb on + strand, within ABZR88_RS12570
Per-strain Table
Position Strand Gene LocusTag Fraction Quercetin stress 0.05 mg/ml remove 3,093,599 + +0.1 3,093,697 + +0.1 3,093,786 - -1.3 3,093,982 + ABZR88_RS12555 0.51 +0.3 3,093,992 + ABZR88_RS12555 0.53 +0.1 3,093,992 + ABZR88_RS12555 0.53 +0.0 3,093,997 + ABZR88_RS12555 0.55 -0.7 3,094,021 + ABZR88_RS12555 0.61 -0.0 3,094,248 - -0.2 3,094,248 - -0.0 3,094,257 + +0.3 3,094,267 + +0.2 3,094,268 - +0.2 3,094,356 - ABZR88_RS12560 0.19 +0.1 3,094,377 + ABZR88_RS12560 0.22 +0.0 3,094,378 - ABZR88_RS12560 0.22 -0.2 3,094,412 + ABZR88_RS12560 0.27 +0.1 3,094,548 - ABZR88_RS12560 0.45 -0.2 3,094,558 + ABZR88_RS12560 0.47 +0.0 3,094,768 + ABZR88_RS12560 0.75 +0.1 3,094,785 + ABZR88_RS12560 0.78 +0.3 3,094,886 + -0.1 3,094,892 - -0.2 3,094,892 - -0.1 3,094,946 - +0.1 3,094,980 - +0.3 3,095,043 + ABZR88_RS12565 0.26 +0.1 3,095,062 + ABZR88_RS12565 0.31 -0.1 3,095,180 + ABZR88_RS12565 0.64 +0.1 3,095,343 - +0.1 3,095,540 - ABZR88_RS12570 0.12 -0.1 3,095,760 - ABZR88_RS12570 0.23 -0.3 3,095,860 - ABZR88_RS12570 0.28 -0.3 3,095,885 + ABZR88_RS12570 0.29 -0.3 3,095,927 + ABZR88_RS12570 0.31 +0.3
Or see this region's nucleotide sequence