Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS06295

Experiment: Quercetin stress 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS06290 and ABZR88_RS06295 are separated by 20 nucleotidesABZR88_RS06295 and ABZR88_RS06300 are separated by 162 nucleotides ABZR88_RS06290: ABZR88_RS06290 - glycoside hydrolase family 43 protein, at 1,562,524 to 1,563,510 _RS06290 ABZR88_RS06295: ABZR88_RS06295 - family 43 glycosylhydrolase, at 1,563,531 to 1,564,607 _RS06295 ABZR88_RS06300: ABZR88_RS06300 - polysaccharide deacetylase family protein, at 1,564,770 to 1,565,612 _RS06300 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -1 0 1at 1562.589 kb on - strandat 1562.810 kb on + strand, within ABZR88_RS06290at 1562.811 kb on - strand, within ABZR88_RS06290at 1562.820 kb on - strand, within ABZR88_RS06290at 1562.869 kb on + strand, within ABZR88_RS06290at 1563.023 kb on - strand, within ABZR88_RS06290at 1563.042 kb on + strand, within ABZR88_RS06290at 1563.046 kb on + strand, within ABZR88_RS06290at 1563.047 kb on - strand, within ABZR88_RS06290at 1563.098 kb on - strand, within ABZR88_RS06290at 1563.104 kb on - strand, within ABZR88_RS06290at 1563.139 kb on + strand, within ABZR88_RS06290at 1563.358 kb on - strand, within ABZR88_RS06290at 1563.359 kb on + strand, within ABZR88_RS06290at 1563.360 kb on - strand, within ABZR88_RS06290at 1563.537 kb on + strandat 1563.545 kb on + strandat 1563.658 kb on + strand, within ABZR88_RS06295at 1563.732 kb on - strand, within ABZR88_RS06295at 1563.818 kb on - strand, within ABZR88_RS06295at 1564.182 kb on - strand, within ABZR88_RS06295at 1564.274 kb on - strand, within ABZR88_RS06295at 1564.276 kb on + strand, within ABZR88_RS06295at 1564.494 kb on - strand, within ABZR88_RS06295at 1564.502 kb on - strandat 1564.502 kb on - strandat 1564.617 kb on - strandat 1564.738 kb on - strandat 1564.746 kb on + strandat 1564.871 kb on - strand, within ABZR88_RS06300at 1564.878 kb on + strand, within ABZR88_RS06300at 1564.947 kb on - strand, within ABZR88_RS06300at 1564.954 kb on - strand, within ABZR88_RS06300at 1565.112 kb on + strand, within ABZR88_RS06300at 1565.141 kb on + strand, within ABZR88_RS06300at 1565.369 kb on + strand, within ABZR88_RS06300at 1565.411 kb on + strand, within ABZR88_RS06300at 1565.411 kb on + strand, within ABZR88_RS06300at 1565.444 kb on + strand, within ABZR88_RS06300at 1565.450 kb on - strand, within ABZR88_RS06300at 1565.482 kb on - strand, within ABZR88_RS06300at 1565.550 kb on + strandat 1565.588 kb on - strandat 1565.603 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Quercetin stress 0.05 mg/ml
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1,562,589 - +0.7
1,562,810 + ABZR88_RS06290 0.29 +0.4
1,562,811 - ABZR88_RS06290 0.29 +0.0
1,562,820 - ABZR88_RS06290 0.30 -0.0
1,562,869 + ABZR88_RS06290 0.35 -0.4
1,563,023 - ABZR88_RS06290 0.51 -0.1
1,563,042 + ABZR88_RS06290 0.52 -0.4
1,563,046 + ABZR88_RS06290 0.53 +0.1
1,563,047 - ABZR88_RS06290 0.53 -1.3
1,563,098 - ABZR88_RS06290 0.58 -0.3
1,563,104 - ABZR88_RS06290 0.59 -0.1
1,563,139 + ABZR88_RS06290 0.62 +0.6
1,563,358 - ABZR88_RS06290 0.84 -0.4
1,563,359 + ABZR88_RS06290 0.85 +0.2
1,563,360 - ABZR88_RS06290 0.85 +0.1
1,563,537 + -0.0
1,563,545 + +0.1
1,563,658 + ABZR88_RS06295 0.12 -0.1
1,563,732 - ABZR88_RS06295 0.19 +0.0
1,563,818 - ABZR88_RS06295 0.27 -0.0
1,564,182 - ABZR88_RS06295 0.60 +0.3
1,564,274 - ABZR88_RS06295 0.69 +0.4
1,564,276 + ABZR88_RS06295 0.69 -1.2
1,564,494 - ABZR88_RS06295 0.89 +0.1
1,564,502 - +0.0
1,564,502 - +0.3
1,564,617 - -0.3
1,564,738 - +0.4
1,564,746 + -0.1
1,564,871 - ABZR88_RS06300 0.12 +0.4
1,564,878 + ABZR88_RS06300 0.13 +0.1
1,564,947 - ABZR88_RS06300 0.21 +0.1
1,564,954 - ABZR88_RS06300 0.22 -0.0
1,565,112 + ABZR88_RS06300 0.41 -0.3
1,565,141 + ABZR88_RS06300 0.44 +0.5
1,565,369 + ABZR88_RS06300 0.71 -0.0
1,565,411 + ABZR88_RS06300 0.76 +0.4
1,565,411 + ABZR88_RS06300 0.76 -0.1
1,565,444 + ABZR88_RS06300 0.80 -0.3
1,565,450 - ABZR88_RS06300 0.81 +0.1
1,565,482 - ABZR88_RS06300 0.84 -0.0
1,565,550 + -0.1
1,565,588 - -0.1
1,565,603 + -0.6

Or see this region's nucleotide sequence