Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS01895

Experiment: copper (II) chloride stress 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS01890 and ABZR88_RS01895 are separated by 30 nucleotidesABZR88_RS01895 and ABZR88_RS01900 are separated by 155 nucleotides ABZR88_RS01890: ABZR88_RS01890 - ribonucleoside-diphosphate reductase small subunit, at 429,276 to 430,250 _RS01890 ABZR88_RS01895: ABZR88_RS01895 - four helix bundle protein, at 430,281 to 430,661 _RS01895 ABZR88_RS01900: ABZR88_RS01900 - ribonucleoside-diphosphate reductase subunit alpha, at 430,817 to 433,195 _RS01900 Position (kb) 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1at 430.320 kb on - strand, within ABZR88_RS01895at 430.320 kb on - strand, within ABZR88_RS01895at 430.350 kb on + strand, within ABZR88_RS01895at 430.437 kb on - strand, within ABZR88_RS01895at 430.517 kb on - strand, within ABZR88_RS01895at 430.551 kb on + strand, within ABZR88_RS01895at 430.624 kb on + strandat 430.682 kb on - strandat 430.765 kb on + strandat 430.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride stress 1 mM
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430,320 - ABZR88_RS01895 0.10 -0.5
430,320 - ABZR88_RS01895 0.10 -2.9
430,350 + ABZR88_RS01895 0.18 +0.5
430,437 - ABZR88_RS01895 0.41 +0.3
430,517 - ABZR88_RS01895 0.62 +1.1
430,551 + ABZR88_RS01895 0.71 -0.3
430,624 + -0.8
430,682 - +0.2
430,765 + -0.5
430,766 - -0.9

Or see this region's nucleotide sequence