Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06488 and MPMX19_06489 are separated by 25 nucleotides MPMX19_06489 and MPMX19_06490 overlap by 4 nucleotides MPMX19_06490 and MPMX19_06491 are separated by 54 nucleotides
MPMX19_06488: MPMX19_06488 - Taurine-binding periplasmic protein, at 271,441 to 272,457
_06488
MPMX19_06489: MPMX19_06489 - Taurine import ATP-binding protein TauB, at 272,483 to 273,286
_06489
MPMX19_06490: MPMX19_06490 - Putative aliphatic sulfonates transport permease protein SsuC, at 273,283 to 274,134
_06490
MPMX19_06491: MPMX19_06491 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 274,189 to 275,040
_06491
Position (kb) 273
274
275 Strain fitness (log2 ratio) -2
-1
0
1 at 272.347 kb on - strand, within MPMX19_06488 at 272.437 kb on + strand at 272.437 kb on + strand at 272.437 kb on + strand at 272.437 kb on + strand at 272.672 kb on - strand, within MPMX19_06489 at 272.672 kb on - strand, within MPMX19_06489 at 272.672 kb on - strand, within MPMX19_06489 at 273.215 kb on + strand at 273.215 kb on + strand at 273.215 kb on + strand at 273.216 kb on - strand at 273.216 kb on - strand at 273.521 kb on - strand, within MPMX19_06490 at 273.521 kb on - strand, within MPMX19_06490 at 273.521 kb on - strand, within MPMX19_06490 at 273.521 kb on - strand, within MPMX19_06490 at 273.521 kb on - strand, within MPMX19_06490 at 273.521 kb on - strand, within MPMX19_06490 at 273.909 kb on - strand, within MPMX19_06490 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.603 kb on + strand, within MPMX19_06491 at 274.604 kb on - strand, within MPMX19_06491 at 274.604 kb on - strand, within MPMX19_06491 at 274.604 kb on - strand, within MPMX19_06491 at 274.876 kb on + strand, within MPMX19_06491 at 274.876 kb on + strand, within MPMX19_06491 at 274.876 kb on + strand, within MPMX19_06491 at 274.877 kb on - strand, within MPMX19_06491 at 274.877 kb on - strand, within MPMX19_06491 at 274.884 kb on + strand, within MPMX19_06491 at 274.885 kb on - strand, within MPMX19_06491 at 274.885 kb on - strand, within MPMX19_06491 at 274.900 kb on + strand, within MPMX19_06491 at 274.900 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.950 kb on + strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.951 kb on - strand, within MPMX19_06491 at 274.982 kb on - strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.001 kb on + strand at 275.002 kb on - strand at 275.036 kb on - strand at 275.072 kb on - strand at 275.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 272,347 - MPMX19_06488 0.89 +0.8 272,437 + -2.7 272,437 + -0.1 272,437 + -1.2 272,437 + +1.1 272,672 - MPMX19_06489 0.24 -1.5 272,672 - MPMX19_06489 0.24 +0.1 272,672 - MPMX19_06489 0.24 +1.3 273,215 + -1.9 273,215 + -0.5 273,215 + -1.3 273,216 - +0.8 273,216 - -0.7 273,521 - MPMX19_06490 0.28 -0.3 273,521 - MPMX19_06490 0.28 -0.2 273,521 - MPMX19_06490 0.28 +0.3 273,521 - MPMX19_06490 0.28 -2.0 273,521 - MPMX19_06490 0.28 -0.9 273,521 - MPMX19_06490 0.28 -0.7 273,909 - MPMX19_06490 0.73 -1.3 274,603 + MPMX19_06491 0.49 +0.2 274,603 + MPMX19_06491 0.49 -0.4 274,603 + MPMX19_06491 0.49 -0.0 274,603 + MPMX19_06491 0.49 +1.5 274,603 + MPMX19_06491 0.49 -1.3 274,603 + MPMX19_06491 0.49 +0.2 274,604 - MPMX19_06491 0.49 +0.8 274,604 - MPMX19_06491 0.49 -0.5 274,604 - MPMX19_06491 0.49 -0.1 274,876 + MPMX19_06491 0.81 -0.7 274,876 + MPMX19_06491 0.81 -0.5 274,876 + MPMX19_06491 0.81 -0.3 274,877 - MPMX19_06491 0.81 +0.1 274,877 - MPMX19_06491 0.81 -1.6 274,884 + MPMX19_06491 0.82 -0.4 274,885 - MPMX19_06491 0.82 +0.8 274,885 - MPMX19_06491 0.82 -1.3 274,900 + MPMX19_06491 0.83 +0.2 274,900 + MPMX19_06491 0.83 -1.1 274,950 + MPMX19_06491 0.89 -0.5 274,950 + MPMX19_06491 0.89 -0.0 274,950 + MPMX19_06491 0.89 -1.0 274,950 + MPMX19_06491 0.89 -0.7 274,950 + MPMX19_06491 0.89 -2.4 274,951 - MPMX19_06491 0.89 -1.3 274,951 - MPMX19_06491 0.89 -0.3 274,951 - MPMX19_06491 0.89 -0.2 274,951 - MPMX19_06491 0.89 +0.2 274,982 - -1.1 275,001 + -1.0 275,001 + +0.3 275,001 + -0.1 275,001 + +0.5 275,001 + +0.3 275,001 + -0.5 275,002 - +0.8 275,036 - +0.8 275,072 - -1.0 275,103 - +0.7
Or see this region's nucleotide sequence