Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06312 and MPMX19_06313 are separated by 193 nucleotides MPMX19_06313 and MPMX19_06314 are separated by 179 nucleotides MPMX19_06314 and MPMX19_06315 are separated by 275 nucleotides MPMX19_06315 and MPMX19_06316 are separated by 213 nucleotides
MPMX19_06312: MPMX19_06312 - hypothetical protein, at 75,058 to 75,348
_06312
MPMX19_06313: MPMX19_06313 - hypothetical protein, at 75,542 to 76,006
_06313
MPMX19_06314: MPMX19_06314 - hypothetical protein, at 76,186 to 76,656
_06314
MPMX19_06315: MPMX19_06315 - ISL3 family transposase ISAli18, at 76,932 to 77,318
_06315
MPMX19_06316: MPMX19_06316 - hypothetical protein, at 77,532 to 78,440
_06316
Position (kb) 76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 75.410 kb on - strand at 75.503 kb on + strand at 75.503 kb on + strand at 75.503 kb on + strand at 75.503 kb on + strand at 75.504 kb on - strand at 75.509 kb on + strand at 75.509 kb on + strand at 75.509 kb on + strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.510 kb on - strand at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.601 kb on + strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.602 kb on - strand, within MPMX19_06313 at 75.662 kb on + strand, within MPMX19_06313 at 75.663 kb on - strand, within MPMX19_06313 at 75.663 kb on - strand, within MPMX19_06313 at 75.936 kb on - strand, within MPMX19_06313 at 76.146 kb on + strand at 76.146 kb on + strand at 76.146 kb on + strand at 76.147 kb on - strand at 76.147 kb on - strand at 76.178 kb on + strand at 76.178 kb on + strand at 76.179 kb on - strand at 76.179 kb on - strand at 76.179 kb on - strand at 76.403 kb on - strand, within MPMX19_06314 at 76.420 kb on + strand, within MPMX19_06314 at 76.421 kb on - strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.525 kb on + strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.526 kb on - strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.600 kb on + strand, within MPMX19_06314 at 76.601 kb on - strand, within MPMX19_06314 at 76.789 kb on - strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 77.221 kb on + strand, within MPMX19_06315 at 77.221 kb on + strand, within MPMX19_06315 at 77.221 kb on + strand, within MPMX19_06315 at 77.222 kb on - strand, within MPMX19_06315 at 77.488 kb on + strand at 77.488 kb on + strand at 77.489 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 75,410 - -1.3 75,503 + +0.3 75,503 + -0.2 75,503 + +0.1 75,503 + +0.2 75,504 - -0.4 75,509 + -0.1 75,509 + +0.4 75,509 + -1.6 75,510 - -0.8 75,510 - -0.7 75,510 - +0.2 75,510 - -0.2 75,510 - -0.7 75,510 - -0.8 75,601 + MPMX19_06313 0.13 -0.9 75,601 + MPMX19_06313 0.13 +0.2 75,601 + MPMX19_06313 0.13 +1.0 75,601 + MPMX19_06313 0.13 -1.2 75,601 + MPMX19_06313 0.13 -0.9 75,601 + MPMX19_06313 0.13 -0.9 75,601 + MPMX19_06313 0.13 +0.7 75,601 + MPMX19_06313 0.13 -0.3 75,601 + MPMX19_06313 0.13 -0.7 75,602 - MPMX19_06313 0.13 +1.0 75,602 - MPMX19_06313 0.13 +1.7 75,602 - MPMX19_06313 0.13 -1.3 75,602 - MPMX19_06313 0.13 -0.9 75,662 + MPMX19_06313 0.26 -0.5 75,663 - MPMX19_06313 0.26 -1.2 75,663 - MPMX19_06313 0.26 +0.5 75,936 - MPMX19_06313 0.85 -0.2 76,146 + +0.1 76,146 + -1.7 76,146 + -1.3 76,147 - +0.2 76,147 - -0.6 76,178 + +0.4 76,178 + -0.3 76,179 - +0.7 76,179 - -0.1 76,179 - +0.1 76,403 - MPMX19_06314 0.46 -1.2 76,420 + MPMX19_06314 0.50 -0.2 76,421 - MPMX19_06314 0.50 +1.2 76,525 + MPMX19_06314 0.72 -2.9 76,525 + MPMX19_06314 0.72 +0.1 76,525 + MPMX19_06314 0.72 -1.6 76,525 + MPMX19_06314 0.72 -0.7 76,525 + MPMX19_06314 0.72 -0.6 76,525 + MPMX19_06314 0.72 +0.0 76,526 - MPMX19_06314 0.72 -2.3 76,526 - MPMX19_06314 0.72 -0.3 76,526 - MPMX19_06314 0.72 -0.3 76,526 - MPMX19_06314 0.72 -1.7 76,585 + MPMX19_06314 0.85 -0.0 76,585 + MPMX19_06314 0.85 -1.2 76,585 + MPMX19_06314 0.85 -0.4 76,585 + MPMX19_06314 0.85 -1.2 76,585 + MPMX19_06314 0.85 -0.2 76,585 + MPMX19_06314 0.85 -0.9 76,585 + MPMX19_06314 0.85 -0.7 76,585 + MPMX19_06314 0.85 -0.3 76,585 + MPMX19_06314 0.85 -0.4 76,585 + MPMX19_06314 0.85 -1.3 76,585 + MPMX19_06314 0.85 +0.3 76,585 + MPMX19_06314 0.85 -0.5 76,585 + MPMX19_06314 0.85 -0.9 76,585 + MPMX19_06314 0.85 +0.3 76,586 - MPMX19_06314 0.85 -1.3 76,586 - MPMX19_06314 0.85 -1.5 76,586 - MPMX19_06314 0.85 -1.7 76,586 - MPMX19_06314 0.85 +0.1 76,586 - MPMX19_06314 0.85 -0.6 76,586 - MPMX19_06314 0.85 -0.7 76,586 - MPMX19_06314 0.85 +0.9 76,586 - MPMX19_06314 0.85 +0.2 76,586 - MPMX19_06314 0.85 -0.5 76,600 + MPMX19_06314 0.88 -0.8 76,601 - MPMX19_06314 0.88 +0.0 76,789 - +1.2 76,814 + +0.8 76,814 + +0.5 76,814 + +0.9 76,814 + +1.0 76,814 + +0.1 76,815 - -1.0 76,815 - -0.8 76,815 - +0.2 76,815 - -0.5 76,815 - -2.4 76,815 - +0.1 76,815 - -1.0 76,815 - -0.8 76,815 - +0.7 77,221 + MPMX19_06315 0.75 -0.5 77,221 + MPMX19_06315 0.75 -0.7 77,221 + MPMX19_06315 0.75 +1.2 77,222 - MPMX19_06315 0.75 -0.4 77,488 + -0.5 77,488 + -0.7 77,489 - -1.6
Or see this region's nucleotide sequence