Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06216 and MPMX19_06217 overlap by 4 nucleotides MPMX19_06217 and MPMX19_06218 are separated by 91 nucleotides
MPMX19_06216: MPMX19_06216 - Inner membrane ABC transporter permease protein YtfT, at 398,784 to 399,827
_06216
MPMX19_06217: MPMX19_06217 - Fructose import ATP-binding protein FruK, at 399,824 to 401,383
_06217
MPMX19_06218: MPMX19_06218 - ABC transporter periplasmic-binding protein YtfQ, at 401,475 to 402,443
_06218
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 399.169 kb on + strand, within MPMX19_06216 at 399.169 kb on + strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.784 kb on + strand at 399.784 kb on + strand at 399.784 kb on + strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.854 kb on + strand at 399.855 kb on - strand at 399.855 kb on - strand at 399.855 kb on - strand at 399.855 kb on - strand at 399.967 kb on - strand at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.978 kb on - strand, within MPMX19_06217 at 401.106 kb on + strand, within MPMX19_06217 at 401.106 kb on + strand, within MPMX19_06217 at 401.107 kb on - strand, within MPMX19_06217 at 401.107 kb on - strand, within MPMX19_06217 at 401.199 kb on + strand, within MPMX19_06217 at 401.200 kb on - strand, within MPMX19_06217 at 401.200 kb on - strand, within MPMX19_06217 at 401.200 kb on - strand, within MPMX19_06217 at 401.479 kb on + strand at 401.479 kb on + strand at 401.480 kb on - strand at 401.480 kb on - strand at 401.480 kb on - strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.599 kb on + strand, within MPMX19_06218 at 401.599 kb on + strand, within MPMX19_06218 at 401.599 kb on + strand, within MPMX19_06218 at 401.599 kb on + strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.779 kb on + strand, within MPMX19_06218 at 401.780 kb on - strand, within MPMX19_06218 at 401.780 kb on - strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 399,169 + MPMX19_06216 0.37 +0.8 399,169 + MPMX19_06216 0.37 +0.2 399,170 - MPMX19_06216 0.37 -0.4 399,170 - MPMX19_06216 0.37 +0.4 399,170 - MPMX19_06216 0.37 +0.9 399,170 - MPMX19_06216 0.37 -0.7 399,170 - MPMX19_06216 0.37 -2.0 399,170 - MPMX19_06216 0.37 -0.5 399,170 - MPMX19_06216 0.37 -0.2 399,170 - MPMX19_06216 0.37 -0.4 399,170 - MPMX19_06216 0.37 +0.2 399,170 - MPMX19_06216 0.37 -0.3 399,170 - MPMX19_06216 0.37 -1.6 399,170 - MPMX19_06216 0.37 -0.4 399,170 - MPMX19_06216 0.37 -0.2 399,170 - MPMX19_06216 0.37 -0.4 399,784 + +0.2 399,784 + +0.4 399,784 + -0.4 399,785 - -1.8 399,785 - -0.6 399,785 - -0.6 399,785 - +2.0 399,785 - +0.3 399,854 + +0.8 399,855 - -0.6 399,855 - +0.4 399,855 - +0.5 399,855 - -0.6 399,967 - -1.7 400,749 + MPMX19_06217 0.59 +0.5 400,749 + MPMX19_06217 0.59 -0.9 400,749 + MPMX19_06217 0.59 -0.9 400,749 + MPMX19_06217 0.59 +1.4 400,749 + MPMX19_06217 0.59 +0.7 400,749 + MPMX19_06217 0.59 -0.7 400,749 + MPMX19_06217 0.59 +0.6 400,749 + MPMX19_06217 0.59 -1.3 400,750 - MPMX19_06217 0.59 -1.5 400,750 - MPMX19_06217 0.59 -0.4 400,750 - MPMX19_06217 0.59 +0.2 400,750 - MPMX19_06217 0.59 -1.4 400,750 - MPMX19_06217 0.59 -1.8 400,750 - MPMX19_06217 0.59 +0.0 400,750 - MPMX19_06217 0.59 +0.0 400,978 - MPMX19_06217 0.74 -1.6 401,106 + MPMX19_06217 0.82 +1.6 401,106 + MPMX19_06217 0.82 -0.6 401,107 - MPMX19_06217 0.82 +0.8 401,107 - MPMX19_06217 0.82 -2.1 401,199 + MPMX19_06217 0.88 +0.8 401,200 - MPMX19_06217 0.88 +0.0 401,200 - MPMX19_06217 0.88 -0.1 401,200 - MPMX19_06217 0.88 -0.6 401,479 + +0.3 401,479 + +1.1 401,480 - +0.3 401,480 - -0.1 401,480 - -1.2 401,500 + -0.4 401,500 + +0.8 401,500 + -0.7 401,500 + -0.2 401,500 + -1.1 401,500 + +0.3 401,501 - -0.0 401,501 - -2.5 401,501 - -2.0 401,501 - +0.0 401,599 + MPMX19_06218 0.13 -0.3 401,599 + MPMX19_06218 0.13 +0.7 401,599 + MPMX19_06218 0.13 +0.0 401,599 + MPMX19_06218 0.13 +0.3 401,600 - MPMX19_06218 0.13 -0.8 401,600 - MPMX19_06218 0.13 -0.8 401,600 - MPMX19_06218 0.13 +0.9 401,600 - MPMX19_06218 0.13 -0.3 401,600 - MPMX19_06218 0.13 -2.1 401,600 - MPMX19_06218 0.13 -0.0 401,600 - MPMX19_06218 0.13 +1.1 401,779 + MPMX19_06218 0.31 -1.2 401,780 - MPMX19_06218 0.31 -0.5 401,780 - MPMX19_06218 0.31 -0.2 402,061 + MPMX19_06218 0.60 +0.3 402,061 + MPMX19_06218 0.60 -0.6 402,061 + MPMX19_06218 0.60 -0.4 402,061 + MPMX19_06218 0.60 +0.0 402,061 + MPMX19_06218 0.60 -0.4 402,061 + MPMX19_06218 0.60 -0.7 402,061 + MPMX19_06218 0.60 +1.6 402,061 + MPMX19_06218 0.60 -1.1 402,061 + MPMX19_06218 0.60 +0.3 402,061 + MPMX19_06218 0.60 -0.4 402,061 + MPMX19_06218 0.60 +0.0 402,061 + MPMX19_06218 0.60 +0.8 402,061 + MPMX19_06218 0.60 -2.2 402,061 + MPMX19_06218 0.60 -0.3 402,061 + MPMX19_06218 0.60 -1.0 402,061 + MPMX19_06218 0.60 +0.2 402,061 + MPMX19_06218 0.60 -0.8 402,061 + MPMX19_06218 0.60 -1.3 402,062 - MPMX19_06218 0.61 -2.6 402,062 - MPMX19_06218 0.61 -0.2 402,062 - MPMX19_06218 0.61 -0.1 402,062 - MPMX19_06218 0.61 +0.3 402,062 - MPMX19_06218 0.61 -0.1 402,062 - MPMX19_06218 0.61 +0.8 402,062 - MPMX19_06218 0.61 -0.2 402,062 - MPMX19_06218 0.61 +0.0 402,062 - MPMX19_06218 0.61 +0.2 402,062 - MPMX19_06218 0.61 -0.2 402,062 - MPMX19_06218 0.61 +0.8 402,062 - MPMX19_06218 0.61 +0.2 402,062 - MPMX19_06218 0.61 -0.2
Or see this region's nucleotide sequence