Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06192 and MPMX19_06193 are separated by 27 nucleotides MPMX19_06193 and MPMX19_06194 are separated by 11 nucleotides MPMX19_06194 and MPMX19_06195 are separated by 24 nucleotides MPMX19_06195 and MPMX19_06196 are separated by 116 nucleotides
MPMX19_06192: MPMX19_06192 - hypothetical protein, at 381,949 to 382,215
_06192
MPMX19_06193: MPMX19_06193 - Flagellar hook-basal body complex protein FliE, at 382,243 to 382,602
_06193
MPMX19_06194: MPMX19_06194 - Flagellar basal-body rod protein FlgC, at 382,614 to 383,033
_06194
MPMX19_06195: MPMX19_06195 - hypothetical protein, at 383,058 to 383,450
_06195
MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934
_06196
Position (kb) 383
384 Strain fitness (log2 ratio) -2
-1
0
1 at 382.271 kb on + strand at 382.271 kb on + strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.565 kb on + strand, within MPMX19_06193 at 382.565 kb on + strand, within MPMX19_06193 at 382.565 kb on + strand, within MPMX19_06193 at 382.566 kb on - strand, within MPMX19_06193 at 382.566 kb on - strand, within MPMX19_06193 at 382.566 kb on - strand, within MPMX19_06193 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.753 kb on + strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.754 kb on - strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.789 kb on + strand, within MPMX19_06194 at 382.790 kb on - strand, within MPMX19_06194 at 382.898 kb on - strand, within MPMX19_06194 at 382.925 kb on + strand, within MPMX19_06194 at 382.925 kb on + strand, within MPMX19_06194 at 382.926 kb on - strand, within MPMX19_06194 at 383.050 kb on + strand at 383.050 kb on + strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.051 kb on - strand at 383.339 kb on - strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.398 kb on + strand, within MPMX19_06195 at 383.399 kb on - strand, within MPMX19_06195 at 383.524 kb on + strand at 383.524 kb on + strand at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.434 kb on + strand, within MPMX19_06196 at 384.435 kb on - strand, within MPMX19_06196
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 382,271 + +0.9 382,271 + -2.2 382,272 - +0.2 382,272 - +0.0 382,565 + MPMX19_06193 0.89 -0.7 382,565 + MPMX19_06193 0.89 -0.4 382,565 + MPMX19_06193 0.89 +0.0 382,566 - MPMX19_06193 0.90 -0.2 382,566 - MPMX19_06193 0.90 -1.4 382,566 - MPMX19_06193 0.90 +1.2 382,753 + MPMX19_06194 0.33 +0.2 382,753 + MPMX19_06194 0.33 -0.4 382,753 + MPMX19_06194 0.33 +1.2 382,753 + MPMX19_06194 0.33 -0.7 382,753 + MPMX19_06194 0.33 -1.3 382,753 + MPMX19_06194 0.33 -0.0 382,753 + MPMX19_06194 0.33 -0.8 382,753 + MPMX19_06194 0.33 -0.1 382,754 - MPMX19_06194 0.33 +0.0 382,754 - MPMX19_06194 0.33 -1.4 382,754 - MPMX19_06194 0.33 -0.6 382,754 - MPMX19_06194 0.33 -0.8 382,754 - MPMX19_06194 0.33 -1.0 382,754 - MPMX19_06194 0.33 -0.4 382,754 - MPMX19_06194 0.33 -0.3 382,754 - MPMX19_06194 0.33 +0.7 382,754 - MPMX19_06194 0.33 -0.7 382,789 + MPMX19_06194 0.42 -0.4 382,789 + MPMX19_06194 0.42 +0.3 382,789 + MPMX19_06194 0.42 +0.6 382,789 + MPMX19_06194 0.42 -1.0 382,790 - MPMX19_06194 0.42 +0.9 382,898 - MPMX19_06194 0.68 -0.7 382,925 + MPMX19_06194 0.74 +1.6 382,925 + MPMX19_06194 0.74 -1.1 382,926 - MPMX19_06194 0.74 +0.5 383,050 + +1.5 383,050 + +0.3 383,051 - +0.7 383,051 - +1.3 383,051 - -1.0 383,051 - +0.8 383,051 - +0.6 383,051 - -0.1 383,339 - MPMX19_06195 0.72 +0.0 383,398 + MPMX19_06195 0.87 -1.1 383,398 + MPMX19_06195 0.87 +0.1 383,398 + MPMX19_06195 0.87 -1.6 383,399 - MPMX19_06195 0.87 -1.3 383,524 + -0.3 383,524 + -1.7 384,434 + MPMX19_06196 0.63 +0.5 384,434 + MPMX19_06196 0.63 -1.6 384,434 + MPMX19_06196 0.63 -0.9 384,434 + MPMX19_06196 0.63 +0.2 384,435 - MPMX19_06196 0.63 +0.0
Or see this region's nucleotide sequence