Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05874

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05873 and MPMX19_05874 are separated by 171 nucleotidesMPMX19_05874 and MPMX19_05875 overlap by 4 nucleotides MPMX19_05873: MPMX19_05873 - D-alanyl-D-alanine carboxypeptidase DacA, at 2,959 to 4,209 _05873 MPMX19_05874: MPMX19_05874 - 2-keto-4-pentenoate hydratase, at 4,381 to 5,118 _05874 MPMX19_05875: MPMX19_05875 - Catabolite control protein A, at 5,115 to 6,215 _05875 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.577 kb on + strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.578 kb on - strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.640 kb on + strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.641 kb on - strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.646 kb on + strand, within MPMX19_05873at 3.647 kb on - strand, within MPMX19_05873at 3.709 kb on + strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.710 kb on - strand, within MPMX19_05873at 3.895 kb on + strand, within MPMX19_05873at 3.895 kb on + strand, within MPMX19_05873at 3.896 kb on - strand, within MPMX19_05873at 3.896 kb on - strand, within MPMX19_05873at 3.896 kb on - strand, within MPMX19_05873at 4.102 kb on + strandat 4.102 kb on + strandat 4.102 kb on + strandat 4.102 kb on + strandat 4.103 kb on - strandat 4.103 kb on - strandat 4.103 kb on - strandat 4.103 kb on - strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.373 kb on + strandat 4.805 kb on + strand, within MPMX19_05874at 4.805 kb on + strand, within MPMX19_05874at 4.805 kb on + strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 4.806 kb on - strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.024 kb on + strand, within MPMX19_05874at 5.025 kb on - strand, within MPMX19_05874at 5.025 kb on - strand, within MPMX19_05874at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.425 kb on + strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.426 kb on - strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.456 kb on + strand, within MPMX19_05875at 5.457 kb on - strand, within MPMX19_05875at 5.457 kb on - strand, within MPMX19_05875at 5.457 kb on - strand, within MPMX19_05875at 5.578 kb on + strand, within MPMX19_05875at 5.578 kb on + strand, within MPMX19_05875at 5.579 kb on - strand, within MPMX19_05875at 5.686 kb on + strand, within MPMX19_05875at 5.687 kb on - strand, within MPMX19_05875at 5.687 kb on - strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.947 kb on + strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 5.948 kb on - strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.028 kb on + strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.029 kb on - strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.034 kb on + strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875at 6.035 kb on - strand, within MPMX19_05875

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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3,577 + MPMX19_05873 0.49 +0.3
3,577 + MPMX19_05873 0.49 -1.1
3,577 + MPMX19_05873 0.49 +0.1
3,577 + MPMX19_05873 0.49 +0.4
3,577 + MPMX19_05873 0.49 -2.0
3,577 + MPMX19_05873 0.49 -1.1
3,578 - MPMX19_05873 0.49 +0.9
3,578 - MPMX19_05873 0.49 -2.0
3,578 - MPMX19_05873 0.49 +0.3
3,578 - MPMX19_05873 0.49 -0.4
3,578 - MPMX19_05873 0.49 -1.6
3,578 - MPMX19_05873 0.49 +0.6
3,640 + MPMX19_05873 0.54 -1.4
3,640 + MPMX19_05873 0.54 -0.5
3,640 + MPMX19_05873 0.54 -1.2
3,640 + MPMX19_05873 0.54 +0.6
3,640 + MPMX19_05873 0.54 -0.4
3,640 + MPMX19_05873 0.54 -1.1
3,640 + MPMX19_05873 0.54 -1.2
3,640 + MPMX19_05873 0.54 +0.2
3,640 + MPMX19_05873 0.54 +0.4
3,640 + MPMX19_05873 0.54 +0.7
3,640 + MPMX19_05873 0.54 -0.0
3,640 + MPMX19_05873 0.54 +0.3
3,640 + MPMX19_05873 0.54 -0.3
3,641 - MPMX19_05873 0.55 +0.3
3,641 - MPMX19_05873 0.55 +0.9
3,641 - MPMX19_05873 0.55 -0.4
3,641 - MPMX19_05873 0.55 +0.2
3,641 - MPMX19_05873 0.55 +0.4
3,641 - MPMX19_05873 0.55 -1.0
3,641 - MPMX19_05873 0.55 -0.1
3,641 - MPMX19_05873 0.55 +0.0
3,641 - MPMX19_05873 0.55 -0.6
3,646 + MPMX19_05873 0.55 +1.2
3,646 + MPMX19_05873 0.55 -0.7
3,646 + MPMX19_05873 0.55 +0.0
3,646 + MPMX19_05873 0.55 +0.6
3,647 - MPMX19_05873 0.55 +0.1
3,709 + MPMX19_05873 0.60 -0.2
3,710 - MPMX19_05873 0.60 -0.7
3,710 - MPMX19_05873 0.60 -0.6
3,710 - MPMX19_05873 0.60 +0.0
3,710 - MPMX19_05873 0.60 -0.8
3,895 + MPMX19_05873 0.75 +0.0
3,895 + MPMX19_05873 0.75 -1.0
3,896 - MPMX19_05873 0.75 -0.4
3,896 - MPMX19_05873 0.75 -0.3
3,896 - MPMX19_05873 0.75 -2.8
4,102 + +0.1
4,102 + -1.8
4,102 + -0.6
4,102 + -1.0
4,103 - -1.6
4,103 - +0.5
4,103 - +0.4
4,103 - -0.4
4,373 + -0.0
4,373 + -1.2
4,373 + +0.2
4,373 + +0.0
4,805 + MPMX19_05874 0.57 -0.6
4,805 + MPMX19_05874 0.57 +0.0
4,805 + MPMX19_05874 0.57 -1.3
4,806 - MPMX19_05874 0.58 -0.3
4,806 - MPMX19_05874 0.58 -2.1
4,806 - MPMX19_05874 0.58 -1.8
4,806 - MPMX19_05874 0.58 -0.6
5,024 + MPMX19_05874 0.87 -0.0
5,024 + MPMX19_05874 0.87 +0.4
5,024 + MPMX19_05874 0.87 +0.2
5,024 + MPMX19_05874 0.87 -1.1
5,025 - MPMX19_05874 0.87 -0.2
5,025 - MPMX19_05874 0.87 -0.7
5,425 + MPMX19_05875 0.28 -0.0
5,425 + MPMX19_05875 0.28 -2.1
5,425 + MPMX19_05875 0.28 -1.4
5,425 + MPMX19_05875 0.28 +0.6
5,425 + MPMX19_05875 0.28 -0.7
5,425 + MPMX19_05875 0.28 -1.2
5,425 + MPMX19_05875 0.28 -0.4
5,425 + MPMX19_05875 0.28 -1.4
5,426 - MPMX19_05875 0.28 -0.4
5,426 - MPMX19_05875 0.28 -2.2
5,426 - MPMX19_05875 0.28 -0.4
5,426 - MPMX19_05875 0.28 -0.2
5,456 + MPMX19_05875 0.31 -1.0
5,456 + MPMX19_05875 0.31 +0.3
5,456 + MPMX19_05875 0.31 +0.2
5,456 + MPMX19_05875 0.31 +1.0
5,456 + MPMX19_05875 0.31 -2.1
5,456 + MPMX19_05875 0.31 -0.2
5,457 - MPMX19_05875 0.31 -0.2
5,457 - MPMX19_05875 0.31 +0.6
5,457 - MPMX19_05875 0.31 -0.0
5,578 + MPMX19_05875 0.42 +1.6
5,578 + MPMX19_05875 0.42 -1.7
5,579 - MPMX19_05875 0.42 -0.7
5,686 + MPMX19_05875 0.52 +0.4
5,687 - MPMX19_05875 0.52 -0.0
5,687 - MPMX19_05875 0.52 -1.4
5,947 + MPMX19_05875 0.76 -1.3
5,947 + MPMX19_05875 0.76 -0.7
5,947 + MPMX19_05875 0.76 +0.0
5,947 + MPMX19_05875 0.76 -0.9
5,947 + MPMX19_05875 0.76 -1.6
5,947 + MPMX19_05875 0.76 +2.0
5,947 + MPMX19_05875 0.76 +0.1
5,947 + MPMX19_05875 0.76 -0.7
5,947 + MPMX19_05875 0.76 -2.3
5,947 + MPMX19_05875 0.76 -1.4
5,947 + MPMX19_05875 0.76 -1.2
5,947 + MPMX19_05875 0.76 +1.0
5,948 - MPMX19_05875 0.76 -0.0
5,948 - MPMX19_05875 0.76 -2.5
5,948 - MPMX19_05875 0.76 +1.2
5,948 - MPMX19_05875 0.76 +0.2
5,948 - MPMX19_05875 0.76 -1.8
5,948 - MPMX19_05875 0.76 +0.7
6,028 + MPMX19_05875 0.83 +0.2
6,028 + MPMX19_05875 0.83 -0.2
6,028 + MPMX19_05875 0.83 +0.9
6,028 + MPMX19_05875 0.83 -1.4
6,028 + MPMX19_05875 0.83 -0.2
6,028 + MPMX19_05875 0.83 +0.7
6,028 + MPMX19_05875 0.83 +1.0
6,028 + MPMX19_05875 0.83 -1.2
6,028 + MPMX19_05875 0.83 -1.4
6,028 + MPMX19_05875 0.83 -1.7
6,028 + MPMX19_05875 0.83 +0.0
6,028 + MPMX19_05875 0.83 +0.0
6,028 + MPMX19_05875 0.83 -1.2
6,028 + MPMX19_05875 0.83 -0.6
6,028 + MPMX19_05875 0.83 +0.7
6,029 - MPMX19_05875 0.83 +1.6
6,029 - MPMX19_05875 0.83 -1.2
6,029 - MPMX19_05875 0.83 -1.8
6,029 - MPMX19_05875 0.83 -0.5
6,029 - MPMX19_05875 0.83 +0.3
6,029 - MPMX19_05875 0.83 +0.3
6,029 - MPMX19_05875 0.83 -0.6
6,029 - MPMX19_05875 0.83 -0.5
6,029 - MPMX19_05875 0.83 +0.1
6,029 - MPMX19_05875 0.83 +0.2
6,029 - MPMX19_05875 0.83 +1.6
6,034 + MPMX19_05875 0.83 -0.6
6,034 + MPMX19_05875 0.83 +0.8
6,034 + MPMX19_05875 0.83 -0.4
6,034 + MPMX19_05875 0.83 +0.4
6,034 + MPMX19_05875 0.83 -2.2
6,034 + MPMX19_05875 0.83 -1.2
6,035 - MPMX19_05875 0.84 -1.4
6,035 - MPMX19_05875 0.84 -0.4
6,035 - MPMX19_05875 0.84 +1.2
6,035 - MPMX19_05875 0.84 -0.6

Or see this region's nucleotide sequence