Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05358

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05357 and MPMX19_05358 are separated by 455 nucleotidesMPMX19_05358 and MPMX19_05359 are separated by 117 nucleotides MPMX19_05357: MPMX19_05357 - hypothetical protein, at 31,034 to 34,093 _05357 MPMX19_05358: MPMX19_05358 - hypothetical protein, at 34,549 to 34,746 _05358 MPMX19_05359: MPMX19_05359 - hypothetical protein, at 34,864 to 36,135 _05359 Position (kb) 34 35Strain fitness (log2 ratio) -2 -1 0 1 2at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.735 kb on + strand, within MPMX19_05357at 33.736 kb on - strand, within MPMX19_05357at 33.736 kb on - strand, within MPMX19_05357at 33.736 kb on - strand, within MPMX19_05357at 33.736 kb on - strand, within MPMX19_05357at 33.736 kb on - strand, within MPMX19_05357at 33.736 kb on - strand, within MPMX19_05357at 33.780 kb on - strand, within MPMX19_05357at 33.885 kb on + strandat 33.886 kb on - strandat 33.886 kb on - strandat 33.915 kb on - strandat 33.915 kb on - strandat 33.936 kb on + strandat 34.025 kb on - strandat 34.059 kb on + strandat 34.103 kb on - strandat 34.127 kb on - strandat 34.127 kb on - strandat 34.151 kb on + strandat 34.200 kb on + strandat 34.200 kb on + strandat 34.200 kb on + strandat 34.200 kb on + strandat 34.201 kb on - strandat 34.229 kb on + strandat 34.229 kb on + strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.230 kb on - strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.235 kb on + strandat 34.236 kb on - strandat 34.236 kb on - strandat 34.370 kb on + strandat 34.371 kb on - strandat 34.371 kb on - strandat 34.373 kb on + strandat 34.374 kb on - strandat 34.374 kb on - strandat 34.374 kb on - strandat 34.374 kb on - strandat 34.505 kb on + strandat 34.506 kb on - strandat 34.533 kb on + strandat 34.533 kb on + strandat 34.533 kb on + strandat 34.533 kb on + strandat 34.534 kb on - strandat 34.603 kb on + strand, within MPMX19_05358at 34.603 kb on + strand, within MPMX19_05358at 34.604 kb on - strand, within MPMX19_05358at 34.885 kb on - strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.920 kb on + strandat 34.921 kb on - strandat 34.921 kb on - strandat 34.921 kb on - strandat 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.152 kb on + strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.153 kb on - strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.570 kb on + strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359at 35.571 kb on - strand, within MPMX19_05359

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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33,735 + MPMX19_05357 0.88 +0.0
33,735 + MPMX19_05357 0.88 -0.1
33,735 + MPMX19_05357 0.88 -0.8
33,735 + MPMX19_05357 0.88 -1.2
33,735 + MPMX19_05357 0.88 +0.8
33,735 + MPMX19_05357 0.88 -1.9
33,735 + MPMX19_05357 0.88 -0.1
33,735 + MPMX19_05357 0.88 +0.5
33,735 + MPMX19_05357 0.88 +0.1
33,735 + MPMX19_05357 0.88 +0.8
33,736 - MPMX19_05357 0.88 +1.6
33,736 - MPMX19_05357 0.88 +0.4
33,736 - MPMX19_05357 0.88 -1.0
33,736 - MPMX19_05357 0.88 +0.1
33,736 - MPMX19_05357 0.88 +0.8
33,736 - MPMX19_05357 0.88 +0.4
33,780 - MPMX19_05357 0.90 -0.5
33,885 + +1.0
33,886 - +2.6
33,886 - -0.0
33,915 - -1.0
33,915 - +0.0
33,936 + +0.2
34,025 - -0.3
34,059 + -0.3
34,103 - +0.9
34,127 - -1.0
34,127 - -1.6
34,151 + -0.7
34,200 + -1.0
34,200 + +0.7
34,200 + +1.3
34,200 + +0.2
34,201 - +0.2
34,229 + -0.3
34,229 + -0.8
34,230 - +0.0
34,230 - -0.3
34,230 - -2.1
34,230 - -0.1
34,230 - +0.9
34,235 + +0.2
34,235 + -1.3
34,235 + -0.3
34,235 + +0.9
34,235 + -2.3
34,235 + +0.1
34,236 - -1.0
34,236 - -0.4
34,370 + -1.4
34,371 - +0.1
34,371 - +0.6
34,373 + +0.4
34,374 - -0.1
34,374 - +1.2
34,374 - -1.6
34,374 - -0.8
34,505 + -2.0
34,506 - -1.7
34,533 + -0.4
34,533 + +0.8
34,533 + -0.9
34,533 + -0.4
34,534 - -1.4
34,603 + MPMX19_05358 0.27 -0.3
34,603 + MPMX19_05358 0.27 -1.3
34,604 - MPMX19_05358 0.28 -1.6
34,885 - +0.0
34,920 + -0.2
34,920 + +0.4
34,920 + -0.6
34,920 + +0.6
34,920 + -1.6
34,921 - +0.0
34,921 - -1.6
34,921 - -0.4
35,152 + MPMX19_05359 0.23 -1.3
35,152 + MPMX19_05359 0.23 -2.0
35,152 + MPMX19_05359 0.23 -0.9
35,152 + MPMX19_05359 0.23 +0.3
35,152 + MPMX19_05359 0.23 -0.2
35,153 - MPMX19_05359 0.23 +0.6
35,153 - MPMX19_05359 0.23 -1.0
35,153 - MPMX19_05359 0.23 -0.2
35,153 - MPMX19_05359 0.23 -1.0
35,153 - MPMX19_05359 0.23 -0.0
35,153 - MPMX19_05359 0.23 -0.9
35,153 - MPMX19_05359 0.23 -0.7
35,153 - MPMX19_05359 0.23 -1.6
35,153 - MPMX19_05359 0.23 -2.4
35,153 - MPMX19_05359 0.23 -1.2
35,570 + MPMX19_05359 0.56 +0.6
35,570 + MPMX19_05359 0.56 -1.1
35,570 + MPMX19_05359 0.56 -0.4
35,570 + MPMX19_05359 0.56 -1.3
35,570 + MPMX19_05359 0.56 +0.2
35,570 + MPMX19_05359 0.56 +0.2
35,570 + MPMX19_05359 0.56 -1.2
35,571 - MPMX19_05359 0.56 +2.2
35,571 - MPMX19_05359 0.56 -0.4
35,571 - MPMX19_05359 0.56 -1.3
35,571 - MPMX19_05359 0.56 -0.3
35,571 - MPMX19_05359 0.56 +0.9

Or see this region's nucleotide sequence