Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04896 and MPMX19_04897 are separated by 155 nucleotides MPMX19_04897 and MPMX19_04898 are separated by 81 nucleotides MPMX19_04898 and MPMX19_04899 are separated by 429 nucleotides
MPMX19_04896: MPMX19_04896 - Outer membrane protein W, at 345,229 to 345,936
_04896
MPMX19_04897: MPMX19_04897 - hypothetical protein, at 346,092 to 346,526
_04897
MPMX19_04898: MPMX19_04898 - Transcriptional regulatory protein LnrK, at 346,608 to 347,261
_04898
MPMX19_04899: MPMX19_04899 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 347,691 to 349,481
_04899
Position (kb) 346
347
348 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 345.637 kb on + strand, within MPMX19_04896 at 345.637 kb on + strand, within MPMX19_04896 at 345.637 kb on + strand, within MPMX19_04896 at 345.637 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.658 kb on + strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.659 kb on - strand, within MPMX19_04896 at 345.670 kb on + strand, within MPMX19_04896 at 345.670 kb on + strand, within MPMX19_04896 at 345.671 kb on - strand, within MPMX19_04896 at 345.671 kb on - strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.730 kb on + strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.731 kb on - strand, within MPMX19_04896 at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.934 kb on + strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 345.935 kb on - strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.061 kb on + strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.062 kb on - strand at 346.888 kb on + strand, within MPMX19_04898 at 346.888 kb on + strand, within MPMX19_04898 at 346.888 kb on + strand, within MPMX19_04898 at 346.888 kb on + strand, within MPMX19_04898 at 346.889 kb on - strand, within MPMX19_04898 at 346.889 kb on - strand, within MPMX19_04898 at 346.889 kb on - strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.957 kb on + strand, within MPMX19_04898 at 346.958 kb on - strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.116 kb on + strand, within MPMX19_04898 at 347.117 kb on - strand, within MPMX19_04898 at 347.117 kb on - strand, within MPMX19_04898 at 347.117 kb on - strand, within MPMX19_04898 at 347.187 kb on - strand, within MPMX19_04898 at 347.343 kb on + strand at 347.344 kb on - strand at 347.344 kb on - strand at 347.365 kb on - strand at 347.365 kb on - strand at 347.367 kb on - strand at 347.367 kb on - strand at 347.386 kb on + strand at 347.387 kb on - strand at 347.387 kb on - strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.403 kb on + strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.404 kb on - strand at 347.438 kb on - strand at 347.464 kb on - strand at 347.464 kb on - strand at 347.495 kb on + strand at 347.510 kb on - strand at 347.510 kb on - strand at 347.510 kb on - strand at 347.785 kb on + strand at 347.785 kb on + strand at 347.785 kb on + strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.786 kb on - strand at 347.917 kb on + strand, within MPMX19_04899 at 347.917 kb on + strand, within MPMX19_04899 at 347.917 kb on + strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 347.918 kb on - strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.166 kb on + strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.167 kb on - strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.196 kb on + strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899 at 348.197 kb on - strand, within MPMX19_04899
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 345,637 + MPMX19_04896 0.58 -2.2 345,637 + MPMX19_04896 0.58 +0.3 345,637 + MPMX19_04896 0.58 -0.0 345,637 + MPMX19_04896 0.58 +0.5 345,658 + MPMX19_04896 0.61 -0.3 345,658 + MPMX19_04896 0.61 -1.3 345,658 + MPMX19_04896 0.61 +0.1 345,658 + MPMX19_04896 0.61 -0.3 345,658 + MPMX19_04896 0.61 -0.7 345,658 + MPMX19_04896 0.61 -0.3 345,658 + MPMX19_04896 0.61 +0.3 345,658 + MPMX19_04896 0.61 +0.8 345,658 + MPMX19_04896 0.61 -0.8 345,658 + MPMX19_04896 0.61 +0.2 345,658 + MPMX19_04896 0.61 -0.4 345,658 + MPMX19_04896 0.61 -0.5 345,659 - MPMX19_04896 0.61 -0.9 345,659 - MPMX19_04896 0.61 -0.3 345,659 - MPMX19_04896 0.61 +1.5 345,659 - MPMX19_04896 0.61 +0.0 345,659 - MPMX19_04896 0.61 -0.6 345,659 - MPMX19_04896 0.61 +1.5 345,659 - MPMX19_04896 0.61 -0.3 345,659 - MPMX19_04896 0.61 +0.2 345,659 - MPMX19_04896 0.61 -0.8 345,659 - MPMX19_04896 0.61 +1.5 345,659 - MPMX19_04896 0.61 -0.3 345,670 + MPMX19_04896 0.62 -0.7 345,670 + MPMX19_04896 0.62 -0.3 345,671 - MPMX19_04896 0.62 +2.1 345,671 - MPMX19_04896 0.62 +0.2 345,730 + MPMX19_04896 0.71 +0.1 345,730 + MPMX19_04896 0.71 -0.3 345,730 + MPMX19_04896 0.71 -2.6 345,730 + MPMX19_04896 0.71 -0.1 345,730 + MPMX19_04896 0.71 -0.1 345,730 + MPMX19_04896 0.71 -0.1 345,730 + MPMX19_04896 0.71 +0.2 345,730 + MPMX19_04896 0.71 +0.5 345,730 + MPMX19_04896 0.71 -0.9 345,730 + MPMX19_04896 0.71 +0.4 345,730 + MPMX19_04896 0.71 -0.5 345,730 + MPMX19_04896 0.71 +0.3 345,731 - MPMX19_04896 0.71 +0.4 345,731 - MPMX19_04896 0.71 +1.5 345,731 - MPMX19_04896 0.71 +0.2 345,731 - MPMX19_04896 0.71 +0.4 345,934 + -1.1 345,934 + -0.6 345,934 + -1.2 345,934 + -1.5 345,934 + -0.4 345,934 + +0.8 345,934 + +1.1 345,934 + +0.0 345,935 - +2.9 345,935 - +0.1 345,935 - -0.5 345,935 - -0.3 345,935 - +0.7 345,935 - +0.2 345,935 - +1.5 345,935 - -0.8 345,935 - -0.5 345,935 - -0.2 345,935 - -2.5 346,061 + -0.4 346,061 + -1.6 346,061 + +0.5 346,061 + -1.2 346,061 + -0.3 346,061 + -0.9 346,061 + -1.5 346,061 + -0.2 346,061 + -1.1 346,061 + +0.5 346,061 + -0.7 346,061 + -0.0 346,061 + -0.8 346,061 + -0.8 346,062 - -0.7 346,062 - +0.3 346,062 - +0.3 346,062 - +2.0 346,062 - -0.8 346,062 - -0.5 346,888 + MPMX19_04898 0.43 +1.5 346,888 + MPMX19_04898 0.43 +0.5 346,888 + MPMX19_04898 0.43 -0.8 346,888 + MPMX19_04898 0.43 +1.5 346,889 - MPMX19_04898 0.43 -1.4 346,889 - MPMX19_04898 0.43 +1.1 346,889 - MPMX19_04898 0.43 -1.6 346,957 + MPMX19_04898 0.53 -1.6 346,957 + MPMX19_04898 0.53 -1.1 346,957 + MPMX19_04898 0.53 -0.5 346,957 + MPMX19_04898 0.53 -0.6 346,958 - MPMX19_04898 0.54 -0.5 347,116 + MPMX19_04898 0.78 -0.1 347,116 + MPMX19_04898 0.78 -0.5 347,116 + MPMX19_04898 0.78 -0.1 347,116 + MPMX19_04898 0.78 -0.8 347,116 + MPMX19_04898 0.78 -0.1 347,116 + MPMX19_04898 0.78 -0.5 347,117 - MPMX19_04898 0.78 +0.8 347,117 - MPMX19_04898 0.78 -0.2 347,117 - MPMX19_04898 0.78 -0.1 347,187 - MPMX19_04898 0.89 +0.3 347,343 + -1.1 347,344 - +0.4 347,344 - -0.6 347,365 - +0.2 347,365 - +0.5 347,367 - -0.5 347,367 - -0.5 347,386 + -1.5 347,387 - -0.8 347,387 - -0.1 347,403 + -1.1 347,403 + -2.1 347,403 + -1.1 347,403 + -0.9 347,404 - -1.5 347,404 - -1.3 347,404 - -1.4 347,404 - -0.8 347,404 - -1.0 347,404 - -1.9 347,404 - +0.1 347,404 - -0.2 347,438 - -0.1 347,464 - -0.2 347,464 - +0.5 347,495 + -1.8 347,510 - +0.9 347,510 - -1.6 347,510 - +0.7 347,785 + -3.9 347,785 + -1.0 347,785 + -0.0 347,786 - -1.0 347,786 - -0.3 347,786 - -0.3 347,786 - -1.6 347,786 - +0.3 347,786 - -1.0 347,786 - -0.4 347,786 - -1.3 347,786 - -0.0 347,917 + MPMX19_04899 0.13 -0.0 347,917 + MPMX19_04899 0.13 -0.0 347,917 + MPMX19_04899 0.13 -1.3 347,918 - MPMX19_04899 0.13 -0.9 347,918 - MPMX19_04899 0.13 -0.4 347,918 - MPMX19_04899 0.13 -0.4 347,918 - MPMX19_04899 0.13 +0.9 347,918 - MPMX19_04899 0.13 +0.3 347,918 - MPMX19_04899 0.13 +0.2 348,166 + MPMX19_04899 0.27 +0.6 348,166 + MPMX19_04899 0.27 +0.4 348,166 + MPMX19_04899 0.27 -0.5 348,166 + MPMX19_04899 0.27 -0.0 348,166 + MPMX19_04899 0.27 +0.7 348,166 + MPMX19_04899 0.27 -0.0 348,167 - MPMX19_04899 0.27 -2.0 348,167 - MPMX19_04899 0.27 -0.5 348,167 - MPMX19_04899 0.27 -0.5 348,167 - MPMX19_04899 0.27 -1.6 348,196 + MPMX19_04899 0.28 +0.4 348,196 + MPMX19_04899 0.28 -0.2 348,196 + MPMX19_04899 0.28 +1.8 348,196 + MPMX19_04899 0.28 -0.5 348,196 + MPMX19_04899 0.28 -2.3 348,196 + MPMX19_04899 0.28 +0.7 348,196 + MPMX19_04899 0.28 +0.3 348,196 + MPMX19_04899 0.28 -0.3 348,196 + MPMX19_04899 0.28 +1.0 348,196 + MPMX19_04899 0.28 +0.2 348,196 + MPMX19_04899 0.28 +0.1 348,196 + MPMX19_04899 0.28 +0.9 348,196 + MPMX19_04899 0.28 -1.0 348,197 - MPMX19_04899 0.28 +0.7 348,197 - MPMX19_04899 0.28 +0.3 348,197 - MPMX19_04899 0.28 +0.1 348,197 - MPMX19_04899 0.28 -1.1 348,197 - MPMX19_04899 0.28 +1.5 348,197 - MPMX19_04899 0.28 +0.5 348,197 - MPMX19_04899 0.28 +0.7 348,197 - MPMX19_04899 0.28 -1.6 348,197 - MPMX19_04899 0.28 -2.7
Or see this region's nucleotide sequence