Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04888 and MPMX19_04889 are separated by 30 nucleotides MPMX19_04889 and MPMX19_04890 are separated by 132 nucleotides MPMX19_04890 and MPMX19_04891 are separated by 66 nucleotides
MPMX19_04888: MPMX19_04888 - hypothetical protein, at 335,439 to 336,491
_04888
MPMX19_04889: MPMX19_04889 - Chromosome partition protein Smc, at 336,522 to 339,983
_04889
MPMX19_04890: MPMX19_04890 - hypothetical protein, at 340,116 to 340,778
_04890
MPMX19_04891: MPMX19_04891 - hypothetical protein, at 340,845 to 341,318
_04891
Position (kb) 336
337
338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.042 kb on + strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.043 kb on - strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.084 kb on + strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.085 kb on - strand, within MPMX19_04888 at 336.086 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.159 kb on + strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.160 kb on - strand, within MPMX19_04888 at 336.173 kb on + strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.174 kb on - strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.231 kb on + strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.232 kb on - strand, within MPMX19_04888 at 336.435 kb on + strand at 336.435 kb on + strand at 336.435 kb on + strand at 336.436 kb on - strand at 336.436 kb on - strand at 336.456 kb on + strand at 336.456 kb on + strand at 336.456 kb on + strand at 336.457 kb on - strand at 336.457 kb on - strand at 336.523 kb on + strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.524 kb on - strand at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.871 kb on + strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.872 kb on - strand, within MPMX19_04889 at 336.922 kb on + strand, within MPMX19_04889 at 336.923 kb on - strand, within MPMX19_04889 at 336.923 kb on - strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.292 kb on + strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 337.293 kb on - strand, within MPMX19_04889 at 338.326 kb on + strand, within MPMX19_04889 at 338.326 kb on + strand, within MPMX19_04889 at 338.326 kb on + strand, within MPMX19_04889 at 338.327 kb on - strand, within MPMX19_04889 at 338.327 kb on - strand, within MPMX19_04889 at 338.327 kb on - strand, within MPMX19_04889 at 338.417 kb on - strand, within MPMX19_04889 at 339.641 kb on - strand at 340.003 kb on + strand at 340.003 kb on + strand at 340.003 kb on + strand at 340.004 kb on - strand at 340.004 kb on - strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.104 kb on + strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.105 kb on - strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.117 kb on + strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.118 kb on - strand at 340.200 kb on - strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.225 kb on + strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.226 kb on - strand, within MPMX19_04890 at 340.409 kb on - strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.411 kb on + strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.412 kb on - strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.513 kb on + strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.514 kb on - strand, within MPMX19_04890 at 340.583 kb on - strand, within MPMX19_04890 at 340.750 kb on + strand at 340.751 kb on - strand at 340.793 kb on + strand at 340.794 kb on - strand at 340.794 kb on - strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.808 kb on + strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.809 kb on - strand at 340.810 kb on + strand at 340.810 kb on + strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.811 kb on - strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.822 kb on + strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand at 340.823 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 336,042 + MPMX19_04888 0.57 +0.4 336,042 + MPMX19_04888 0.57 -0.2 336,042 + MPMX19_04888 0.57 -0.8 336,042 + MPMX19_04888 0.57 -2.2 336,042 + MPMX19_04888 0.57 +0.3 336,042 + MPMX19_04888 0.57 +0.3 336,042 + MPMX19_04888 0.57 -0.4 336,042 + MPMX19_04888 0.57 -0.0 336,042 + MPMX19_04888 0.57 +1.0 336,042 + MPMX19_04888 0.57 -0.2 336,043 - MPMX19_04888 0.57 -0.1 336,043 - MPMX19_04888 0.57 +0.3 336,043 - MPMX19_04888 0.57 +0.3 336,043 - MPMX19_04888 0.57 -0.6 336,043 - MPMX19_04888 0.57 -1.3 336,043 - MPMX19_04888 0.57 -1.0 336,043 - MPMX19_04888 0.57 -1.3 336,043 - MPMX19_04888 0.57 -0.8 336,043 - MPMX19_04888 0.57 +0.1 336,043 - MPMX19_04888 0.57 +1.0 336,043 - MPMX19_04888 0.57 -0.9 336,084 + MPMX19_04888 0.61 -0.0 336,084 + MPMX19_04888 0.61 +0.1 336,084 + MPMX19_04888 0.61 +0.5 336,084 + MPMX19_04888 0.61 +1.5 336,084 + MPMX19_04888 0.61 +0.5 336,084 + MPMX19_04888 0.61 +1.1 336,084 + MPMX19_04888 0.61 +1.2 336,085 - MPMX19_04888 0.61 +0.2 336,085 - MPMX19_04888 0.61 -0.0 336,085 - MPMX19_04888 0.61 -1.6 336,085 - MPMX19_04888 0.61 -1.5 336,085 - MPMX19_04888 0.61 -1.9 336,085 - MPMX19_04888 0.61 +0.5 336,086 + MPMX19_04888 0.61 -0.8 336,159 + MPMX19_04888 0.68 +1.1 336,159 + MPMX19_04888 0.68 -1.0 336,159 + MPMX19_04888 0.68 -2.6 336,159 + MPMX19_04888 0.68 +0.6 336,160 - MPMX19_04888 0.68 -0.5 336,160 - MPMX19_04888 0.68 -0.8 336,160 - MPMX19_04888 0.68 +0.6 336,160 - MPMX19_04888 0.68 -0.2 336,173 + MPMX19_04888 0.70 +0.8 336,174 - MPMX19_04888 0.70 +0.8 336,174 - MPMX19_04888 0.70 -1.7 336,174 - MPMX19_04888 0.70 -1.8 336,174 - MPMX19_04888 0.70 +0.8 336,174 - MPMX19_04888 0.70 -0.7 336,174 - MPMX19_04888 0.70 +1.3 336,231 + MPMX19_04888 0.75 +1.2 336,231 + MPMX19_04888 0.75 +1.1 336,231 + MPMX19_04888 0.75 +1.5 336,231 + MPMX19_04888 0.75 +0.2 336,232 - MPMX19_04888 0.75 +0.8 336,232 - MPMX19_04888 0.75 +0.4 336,232 - MPMX19_04888 0.75 +0.5 336,232 - MPMX19_04888 0.75 +0.5 336,435 + -0.1 336,435 + -0.7 336,435 + +0.2 336,436 - -1.3 336,436 - +0.4 336,456 + -0.7 336,456 + -0.8 336,456 + -0.1 336,457 - +1.3 336,457 - -0.4 336,523 + +0.8 336,524 - -0.6 336,524 - +0.0 336,524 - +0.1 336,524 - +0.4 336,524 - -0.1 336,871 + MPMX19_04889 0.10 -0.0 336,871 + MPMX19_04889 0.10 -0.3 336,871 + MPMX19_04889 0.10 -1.9 336,871 + MPMX19_04889 0.10 -1.3 336,871 + MPMX19_04889 0.10 -0.2 336,871 + MPMX19_04889 0.10 -0.5 336,871 + MPMX19_04889 0.10 -0.0 336,872 - MPMX19_04889 0.10 +0.4 336,872 - MPMX19_04889 0.10 +0.4 336,872 - MPMX19_04889 0.10 -1.6 336,872 - MPMX19_04889 0.10 -0.3 336,872 - MPMX19_04889 0.10 -0.6 336,872 - MPMX19_04889 0.10 -1.2 336,872 - MPMX19_04889 0.10 +0.7 336,872 - MPMX19_04889 0.10 -0.9 336,872 - MPMX19_04889 0.10 -1.2 336,872 - MPMX19_04889 0.10 +0.1 336,872 - MPMX19_04889 0.10 -0.9 336,872 - MPMX19_04889 0.10 +1.8 336,872 - MPMX19_04889 0.10 -0.8 336,872 - MPMX19_04889 0.10 +0.0 336,872 - MPMX19_04889 0.10 -0.0 336,872 - MPMX19_04889 0.10 -1.0 336,872 - MPMX19_04889 0.10 -1.5 336,872 - MPMX19_04889 0.10 +0.5 336,922 + MPMX19_04889 0.12 -0.8 336,923 - MPMX19_04889 0.12 +0.7 336,923 - MPMX19_04889 0.12 -1.2 337,292 + MPMX19_04889 0.22 -2.3 337,292 + MPMX19_04889 0.22 -0.8 337,292 + MPMX19_04889 0.22 -1.4 337,292 + MPMX19_04889 0.22 +0.3 337,293 - MPMX19_04889 0.22 +0.7 337,293 - MPMX19_04889 0.22 -1.5 337,293 - MPMX19_04889 0.22 -0.6 337,293 - MPMX19_04889 0.22 -0.3 337,293 - MPMX19_04889 0.22 -0.8 338,326 + MPMX19_04889 0.52 -0.5 338,326 + MPMX19_04889 0.52 -0.8 338,326 + MPMX19_04889 0.52 -0.0 338,327 - MPMX19_04889 0.52 -1.6 338,327 - MPMX19_04889 0.52 -1.0 338,327 - MPMX19_04889 0.52 +0.2 338,417 - MPMX19_04889 0.55 +0.7 339,641 - +0.5 340,003 + -0.6 340,003 + -0.2 340,003 + +0.1 340,004 - -1.5 340,004 - -0.6 340,104 + -0.7 340,104 + -0.2 340,104 + -0.9 340,105 - -0.4 340,105 - +1.4 340,105 - +0.3 340,105 - -1.3 340,105 - -1.2 340,105 - -1.3 340,117 + -1.0 340,117 + -0.3 340,117 + -0.8 340,117 + -2.5 340,117 + -1.4 340,117 + -1.3 340,117 + +0.3 340,118 - -1.2 340,118 - -0.6 340,118 - +1.0 340,118 - +0.4 340,118 - -1.3 340,118 - +0.4 340,118 - -0.7 340,118 - +0.2 340,118 - -0.7 340,118 - -0.9 340,118 - -0.2 340,118 - -0.2 340,118 - -1.3 340,118 - -1.5 340,118 - +0.1 340,118 - -1.5 340,200 - MPMX19_04890 0.13 +0.5 340,225 + MPMX19_04890 0.16 +0.5 340,225 + MPMX19_04890 0.16 +0.0 340,225 + MPMX19_04890 0.16 -1.6 340,225 + MPMX19_04890 0.16 +0.2 340,226 - MPMX19_04890 0.17 +0.3 340,226 - MPMX19_04890 0.17 -0.0 340,226 - MPMX19_04890 0.17 -0.2 340,226 - MPMX19_04890 0.17 -0.7 340,226 - MPMX19_04890 0.17 -0.5 340,226 - MPMX19_04890 0.17 -0.4 340,409 - MPMX19_04890 0.44 -0.3 340,411 + MPMX19_04890 0.44 +1.8 340,411 + MPMX19_04890 0.44 -1.4 340,411 + MPMX19_04890 0.44 +0.2 340,412 - MPMX19_04890 0.45 +1.9 340,412 - MPMX19_04890 0.45 +0.3 340,513 + MPMX19_04890 0.60 -0.8 340,513 + MPMX19_04890 0.60 -1.0 340,513 + MPMX19_04890 0.60 +1.5 340,514 - MPMX19_04890 0.60 +0.2 340,514 - MPMX19_04890 0.60 -1.5 340,514 - MPMX19_04890 0.60 -0.5 340,514 - MPMX19_04890 0.60 -0.0 340,514 - MPMX19_04890 0.60 -0.5 340,514 - MPMX19_04890 0.60 +0.7 340,583 - MPMX19_04890 0.70 -0.5 340,750 + -2.3 340,751 - -0.5 340,793 + +1.2 340,794 - +0.6 340,794 - +1.5 340,808 + -1.3 340,808 + -2.2 340,808 + -0.9 340,808 + -0.7 340,808 + -0.3 340,808 + +0.4 340,808 + +1.4 340,808 + -1.2 340,808 + -1.4 340,808 + +0.2 340,808 + -0.6 340,808 + -0.3 340,809 - -0.0 340,809 - -0.9 340,809 - +1.1 340,809 - +0.1 340,809 - -0.3 340,809 - -1.0 340,809 - -0.3 340,809 - -0.2 340,809 - -0.9 340,809 - -1.3 340,809 - +1.2 340,809 - -0.3 340,809 - -1.3 340,809 - -0.8 340,810 + +0.7 340,810 + -1.8 340,811 - -1.9 340,811 - -0.5 340,811 - -2.5 340,811 - -0.7 340,811 - -0.9 340,811 - +0.4 340,811 - -0.3 340,811 - -0.8 340,811 - -0.1 340,811 - -0.8 340,822 + -1.0 340,822 + -1.8 340,822 + -1.0 340,822 + -0.2 340,822 + +0.5 340,823 - -1.3 340,823 - +0.2 340,823 - -1.0 340,823 - -0.8 340,823 - -0.8
Or see this region's nucleotide sequence