Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04281

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04278 and MPMX19_04279 are separated by 134 nucleotidesMPMX19_04279 and MPMX19_04280 are separated by 33 nucleotidesMPMX19_04280 and MPMX19_04281 are separated by 9 nucleotidesMPMX19_04281 and MPMX19_04282 overlap by 13 nucleotides MPMX19_04278: MPMX19_04278 - Threonine efflux protein, at 639,118 to 639,753 _04278 MPMX19_04279: MPMX19_04279 - hypothetical protein, at 639,888 to 640,148 _04279 MPMX19_04280: MPMX19_04280 - hypothetical protein, at 640,182 to 640,523 _04280 MPMX19_04281: MPMX19_04281 - hypothetical protein, at 640,533 to 641,420 _04281 MPMX19_04282: MPMX19_04282 - hypothetical protein, at 641,408 to 642,394 _04282 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1 2at 639.536 kb on + strand, within MPMX19_04278at 639.536 kb on + strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.537 kb on - strand, within MPMX19_04278at 639.788 kb on - strandat 639.943 kb on + strand, within MPMX19_04279at 639.943 kb on + strand, within MPMX19_04279at 639.943 kb on + strand, within MPMX19_04279at 639.944 kb on - strand, within MPMX19_04279at 639.944 kb on - strand, within MPMX19_04279at 639.944 kb on - strand, within MPMX19_04279at 639.944 kb on - strand, within MPMX19_04279at 639.944 kb on - strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.042 kb on + strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.043 kb on - strand, within MPMX19_04279at 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.140 kb on + strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.141 kb on - strandat 640.156 kb on + strandat 640.157 kb on - strandat 640.157 kb on - strandat 640.157 kb on - strandat 640.157 kb on - strandat 640.157 kb on - strandat 640.372 kb on + strand, within MPMX19_04280at 640.372 kb on + strand, within MPMX19_04280at 640.372 kb on + strand, within MPMX19_04280at 640.373 kb on - strand, within MPMX19_04280at 640.373 kb on - strand, within MPMX19_04280at 640.373 kb on - strand, within MPMX19_04280at 640.402 kb on + strand, within MPMX19_04280at 640.403 kb on - strand, within MPMX19_04280at 640.783 kb on + strand, within MPMX19_04281at 640.783 kb on + strand, within MPMX19_04281at 640.783 kb on + strand, within MPMX19_04281at 640.783 kb on + strand, within MPMX19_04281at 640.784 kb on - strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.807 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.832 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.834 kb on + strand, within MPMX19_04281at 640.835 kb on - strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.005 kb on + strand, within MPMX19_04281at 641.006 kb on - strand, within MPMX19_04281at 641.006 kb on - strand, within MPMX19_04281at 641.006 kb on - strand, within MPMX19_04281at 641.065 kb on + strand, within MPMX19_04281at 641.065 kb on + strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.066 kb on - strand, within MPMX19_04281at 641.571 kb on + strand, within MPMX19_04282at 641.571 kb on + strand, within MPMX19_04282at 641.571 kb on + strand, within MPMX19_04282at 641.571 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.610 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 641.814 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282at 642.159 kb on + strand, within MPMX19_04282

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
639,536 + MPMX19_04278 0.66 -1.0
639,536 + MPMX19_04278 0.66 +0.9
639,537 - MPMX19_04278 0.66 -0.4
639,537 - MPMX19_04278 0.66 +1.0
639,537 - MPMX19_04278 0.66 +0.0
639,537 - MPMX19_04278 0.66 +0.0
639,537 - MPMX19_04278 0.66 +0.3
639,537 - MPMX19_04278 0.66 +0.0
639,537 - MPMX19_04278 0.66 -1.2
639,537 - MPMX19_04278 0.66 +0.4
639,788 - -0.6
639,943 + MPMX19_04279 0.21 -1.0
639,943 + MPMX19_04279 0.21 -1.7
639,943 + MPMX19_04279 0.21 -1.4
639,944 - MPMX19_04279 0.21 -0.7
639,944 - MPMX19_04279 0.21 +0.4
639,944 - MPMX19_04279 0.21 -1.7
639,944 - MPMX19_04279 0.21 -1.3
639,944 - MPMX19_04279 0.21 +1.0
640,042 + MPMX19_04279 0.59 -1.0
640,042 + MPMX19_04279 0.59 -0.6
640,042 + MPMX19_04279 0.59 +1.0
640,042 + MPMX19_04279 0.59 -0.2
640,042 + MPMX19_04279 0.59 +0.7
640,042 + MPMX19_04279 0.59 -0.7
640,042 + MPMX19_04279 0.59 -0.6
640,042 + MPMX19_04279 0.59 +0.0
640,042 + MPMX19_04279 0.59 +0.6
640,042 + MPMX19_04279 0.59 -0.2
640,042 + MPMX19_04279 0.59 -0.7
640,042 + MPMX19_04279 0.59 +0.1
640,042 + MPMX19_04279 0.59 +0.4
640,042 + MPMX19_04279 0.59 +0.0
640,042 + MPMX19_04279 0.59 +0.0
640,042 + MPMX19_04279 0.59 +0.1
640,042 + MPMX19_04279 0.59 +1.2
640,042 + MPMX19_04279 0.59 -0.3
640,043 - MPMX19_04279 0.59 +1.0
640,043 - MPMX19_04279 0.59 -1.2
640,043 - MPMX19_04279 0.59 +0.4
640,043 - MPMX19_04279 0.59 +0.7
640,043 - MPMX19_04279 0.59 +1.5
640,043 - MPMX19_04279 0.59 -0.8
640,043 - MPMX19_04279 0.59 +0.5
640,043 - MPMX19_04279 0.59 -1.6
640,043 - MPMX19_04279 0.59 -1.6
640,043 - MPMX19_04279 0.59 +1.5
640,043 - MPMX19_04279 0.59 +0.4
640,043 - MPMX19_04279 0.59 +0.6
640,140 + -0.4
640,140 + -2.1
640,140 + +1.6
640,140 + +1.2
640,140 + -0.6
640,140 + +0.3
640,140 + -1.1
640,140 + +0.6
640,140 + -0.4
640,140 + -0.4
640,140 + -0.5
640,140 + -0.5
640,140 + -1.2
640,140 + -1.0
640,140 + +0.5
640,141 - -1.3
640,141 - -1.4
640,141 - +0.5
640,141 - +1.6
640,141 - -0.6
640,141 - -0.5
640,141 - -0.7
640,141 - +0.5
640,141 - -0.9
640,141 - +0.9
640,141 - +0.7
640,141 - +0.2
640,156 + -0.2
640,157 - -0.7
640,157 - +0.2
640,157 - +0.8
640,157 - +0.4
640,157 - -0.6
640,372 + MPMX19_04280 0.56 -2.1
640,372 + MPMX19_04280 0.56 -0.4
640,372 + MPMX19_04280 0.56 -0.1
640,373 - MPMX19_04280 0.56 -0.5
640,373 - MPMX19_04280 0.56 -0.0
640,373 - MPMX19_04280 0.56 +0.6
640,402 + MPMX19_04280 0.64 +0.6
640,403 - MPMX19_04280 0.65 +1.0
640,783 + MPMX19_04281 0.28 +0.2
640,783 + MPMX19_04281 0.28 -0.1
640,783 + MPMX19_04281 0.28 +0.5
640,783 + MPMX19_04281 0.28 -0.3
640,784 - MPMX19_04281 0.28 -0.7
640,807 + MPMX19_04281 0.31 -0.7
640,807 + MPMX19_04281 0.31 -0.5
640,807 + MPMX19_04281 0.31 +0.6
640,807 + MPMX19_04281 0.31 +0.3
640,832 + MPMX19_04281 0.34 -0.6
640,832 + MPMX19_04281 0.34 +0.8
640,832 + MPMX19_04281 0.34 -1.1
640,832 + MPMX19_04281 0.34 +0.8
640,832 + MPMX19_04281 0.34 -0.2
640,832 + MPMX19_04281 0.34 -0.1
640,832 + MPMX19_04281 0.34 -1.0
640,834 + MPMX19_04281 0.34 -0.4
640,834 + MPMX19_04281 0.34 -0.8
640,834 + MPMX19_04281 0.34 -1.8
640,834 + MPMX19_04281 0.34 +1.4
640,834 + MPMX19_04281 0.34 -0.1
640,834 + MPMX19_04281 0.34 +1.2
640,834 + MPMX19_04281 0.34 -0.1
640,834 + MPMX19_04281 0.34 +0.6
640,834 + MPMX19_04281 0.34 +0.6
640,834 + MPMX19_04281 0.34 -0.1
640,834 + MPMX19_04281 0.34 -0.2
640,834 + MPMX19_04281 0.34 +0.3
640,834 + MPMX19_04281 0.34 +0.4
640,834 + MPMX19_04281 0.34 +0.9
640,834 + MPMX19_04281 0.34 +0.7
640,834 + MPMX19_04281 0.34 -0.8
640,834 + MPMX19_04281 0.34 -1.0
640,834 + MPMX19_04281 0.34 +0.6
640,834 + MPMX19_04281 0.34 -1.6
640,834 + MPMX19_04281 0.34 +0.4
640,835 - MPMX19_04281 0.34 +2.6
641,005 + MPMX19_04281 0.53 -0.6
641,005 + MPMX19_04281 0.53 -0.4
641,005 + MPMX19_04281 0.53 -1.4
641,005 + MPMX19_04281 0.53 +1.0
641,005 + MPMX19_04281 0.53 +1.1
641,005 + MPMX19_04281 0.53 -0.7
641,005 + MPMX19_04281 0.53 +0.0
641,005 + MPMX19_04281 0.53 +0.5
641,005 + MPMX19_04281 0.53 -1.2
641,006 - MPMX19_04281 0.53 +0.6
641,006 - MPMX19_04281 0.53 +1.6
641,006 - MPMX19_04281 0.53 +0.6
641,065 + MPMX19_04281 0.60 -1.4
641,065 + MPMX19_04281 0.60 -0.6
641,066 - MPMX19_04281 0.60 -1.2
641,066 - MPMX19_04281 0.60 +0.6
641,066 - MPMX19_04281 0.60 -0.3
641,066 - MPMX19_04281 0.60 -0.1
641,066 - MPMX19_04281 0.60 +0.0
641,571 + MPMX19_04282 0.17 -1.4
641,571 + MPMX19_04282 0.17 +1.4
641,571 + MPMX19_04282 0.17 -0.1
641,571 + MPMX19_04282 0.17 -0.5
641,610 + MPMX19_04282 0.20 -0.0
641,610 + MPMX19_04282 0.20 +0.3
641,610 + MPMX19_04282 0.20 -0.8
641,610 + MPMX19_04282 0.20 +0.1
641,610 + MPMX19_04282 0.20 -1.0
641,610 + MPMX19_04282 0.20 -1.8
641,610 + MPMX19_04282 0.20 -1.4
641,610 + MPMX19_04282 0.20 +0.5
641,610 + MPMX19_04282 0.20 -1.0
641,814 + MPMX19_04282 0.41 -0.7
641,814 + MPMX19_04282 0.41 -0.4
641,814 + MPMX19_04282 0.41 -0.8
641,814 + MPMX19_04282 0.41 -1.1
642,159 + MPMX19_04282 0.76 -0.9
642,159 + MPMX19_04282 0.76 +0.9
642,159 + MPMX19_04282 0.76 +0.3
642,159 + MPMX19_04282 0.76 -0.2
642,159 + MPMX19_04282 0.76 -2.2

Or see this region's nucleotide sequence