Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04082 and MPMX19_04083 overlap by 4 nucleotides MPMX19_04083 and MPMX19_04084 are separated by 10 nucleotides MPMX19_04084 and MPMX19_04085 are separated by 167 nucleotides MPMX19_04085 and MPMX19_04086 overlap by 4 nucleotides
MPMX19_04082: MPMX19_04082 - hypothetical protein, at 386,602 to 387,138
_04082
MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581
_04083
MPMX19_04084: MPMX19_04084 - hypothetical protein, at 387,592 to 388,041
_04084
MPMX19_04085: MPMX19_04085 - hypothetical protein, at 388,209 to 388,562
_04085
MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463
_04086
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.686 kb on + strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.734 kb on + strand, within MPMX19_04082 at 386.735 kb on - strand, within MPMX19_04082 at 386.735 kb on - strand, within MPMX19_04082 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.322 kb on - strand, within MPMX19_04083 at 387.322 kb on - strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.560 kb on + strand at 387.560 kb on + strand at 387.560 kb on + strand at 387.561 kb on - strand at 387.561 kb on - strand at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 388.027 kb on + strand at 388.027 kb on + strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.162 kb on + strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.612 kb on + strand at 388.612 kb on + strand at 388.612 kb on + strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.613 kb on - strand at 388.648 kb on - strand at 388.648 kb on - strand at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.923 kb on + strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086 at 388.924 kb on - strand, within MPMX19_04086
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 386,686 + MPMX19_04082 0.16 +0.5 386,687 - MPMX19_04082 0.16 -0.1 386,687 - MPMX19_04082 0.16 -2.2 386,687 - MPMX19_04082 0.16 +0.6 386,687 - MPMX19_04082 0.16 -2.3 386,687 - MPMX19_04082 0.16 -1.0 386,687 - MPMX19_04082 0.16 -0.3 386,687 - MPMX19_04082 0.16 +0.9 386,687 - MPMX19_04082 0.16 -0.5 386,687 - MPMX19_04082 0.16 +0.6 386,687 - MPMX19_04082 0.16 +0.4 386,710 + MPMX19_04082 0.20 -0.7 386,710 + MPMX19_04082 0.20 -0.3 386,710 + MPMX19_04082 0.20 -0.5 386,710 + MPMX19_04082 0.20 +0.6 386,710 + MPMX19_04082 0.20 +0.6 386,710 + MPMX19_04082 0.20 +2.0 386,710 + MPMX19_04082 0.20 +0.4 386,711 - MPMX19_04082 0.20 -0.4 386,711 - MPMX19_04082 0.20 +0.1 386,711 - MPMX19_04082 0.20 -1.5 386,711 - MPMX19_04082 0.20 -0.4 386,711 - MPMX19_04082 0.20 -0.4 386,711 - MPMX19_04082 0.20 +0.6 386,711 - MPMX19_04082 0.20 +0.1 386,711 - MPMX19_04082 0.20 +0.6 386,711 - MPMX19_04082 0.20 -1.9 386,711 - MPMX19_04082 0.20 -0.3 386,711 - MPMX19_04082 0.20 -0.4 386,734 + MPMX19_04082 0.25 -0.7 386,735 - MPMX19_04082 0.25 -2.1 386,735 - MPMX19_04082 0.25 -1.2 387,321 + MPMX19_04083 0.42 +0.0 387,321 + MPMX19_04083 0.42 -1.4 387,321 + MPMX19_04083 0.42 -1.5 387,321 + MPMX19_04083 0.42 -1.1 387,321 + MPMX19_04083 0.42 +0.3 387,321 + MPMX19_04083 0.42 +0.3 387,322 - MPMX19_04083 0.42 -0.9 387,322 - MPMX19_04083 0.42 -0.4 387,411 + MPMX19_04083 0.62 +0.4 387,411 + MPMX19_04083 0.62 +0.1 387,411 + MPMX19_04083 0.62 +0.6 387,411 + MPMX19_04083 0.62 -1.2 387,411 + MPMX19_04083 0.62 -0.4 387,411 + MPMX19_04083 0.62 -1.5 387,411 + MPMX19_04083 0.62 -1.6 387,412 - MPMX19_04083 0.62 -0.5 387,412 - MPMX19_04083 0.62 +0.0 387,412 - MPMX19_04083 0.62 -0.7 387,412 - MPMX19_04083 0.62 +0.9 387,412 - MPMX19_04083 0.62 +0.8 387,560 + -2.6 387,560 + -0.6 387,560 + +0.3 387,561 - +0.4 387,561 - +1.2 387,862 + MPMX19_04084 0.60 -1.1 387,862 + MPMX19_04084 0.60 -0.6 387,862 + MPMX19_04084 0.60 +0.2 387,862 + MPMX19_04084 0.60 -0.7 387,862 + MPMX19_04084 0.60 -0.4 387,862 + MPMX19_04084 0.60 +0.8 387,862 + MPMX19_04084 0.60 -0.9 387,862 + MPMX19_04084 0.60 +0.0 387,862 + MPMX19_04084 0.60 -0.5 387,863 - MPMX19_04084 0.60 +0.4 387,863 - MPMX19_04084 0.60 +0.7 387,863 - MPMX19_04084 0.60 -1.0 387,863 - MPMX19_04084 0.60 -0.6 387,863 - MPMX19_04084 0.60 -1.0 387,863 - MPMX19_04084 0.60 -0.5 387,863 - MPMX19_04084 0.60 -1.0 388,027 + +0.1 388,027 + -0.3 388,028 - +0.6 388,028 - -0.4 388,028 - -2.0 388,028 - -1.2 388,028 - -0.6 388,028 - +2.3 388,028 - +0.3 388,028 - -0.5 388,054 + -1.6 388,054 + -2.0 388,054 + +1.0 388,054 + -0.8 388,054 + -0.9 388,054 + -0.7 388,054 + -1.2 388,054 + +0.1 388,055 - -0.4 388,055 - +0.5 388,055 - +1.1 388,055 - +0.0 388,055 - -0.2 388,055 - +0.1 388,055 - +0.1 388,055 - +0.6 388,055 - -0.5 388,055 - +0.3 388,055 - -1.1 388,055 - +0.0 388,055 - -0.6 388,055 - -0.2 388,066 + -0.4 388,066 + +0.1 388,066 + -0.1 388,066 + -1.1 388,066 + -0.7 388,066 + -1.3 388,066 + +1.6 388,066 + -0.2 388,066 + -0.7 388,066 + -2.8 388,067 - -1.0 388,067 - +0.4 388,067 - -1.1 388,067 - +0.5 388,067 - -0.9 388,162 + -0.3 388,163 - -0.1 388,163 - -1.4 388,163 - -0.1 388,163 - -0.6 388,184 + -0.6 388,184 + +0.0 388,184 + +0.6 388,193 + +0.9 388,193 + -0.7 388,193 + -0.6 388,193 + -1.7 388,193 + +1.0 388,193 + -1.2 388,196 + -0.4 388,196 + +1.2 388,196 + -0.4 388,196 + -0.1 388,196 + -0.3 388,196 + -2.7 388,196 + +1.6 388,196 + +0.5 388,196 + -1.6 388,196 + +1.2 388,196 + -0.2 388,196 + -0.5 388,196 + -1.7 388,196 + +1.6 388,196 + -0.3 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 +0.4 388,411 + MPMX19_04085 0.57 -1.0 388,411 + MPMX19_04085 0.57 +0.3 388,411 + MPMX19_04085 0.57 -0.8 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 -0.1 388,412 - MPMX19_04085 0.57 -1.3 388,412 - MPMX19_04085 0.57 +1.0 388,612 + -0.7 388,612 + -0.2 388,612 + -1.5 388,613 - -1.3 388,613 - +0.5 388,613 - +1.1 388,613 - -0.6 388,613 - -0.1 388,613 - +0.7 388,613 - -1.6 388,613 - +0.1 388,613 - -0.3 388,613 - -0.1 388,613 - -0.8 388,613 - -0.5 388,648 - +0.1 388,648 - +0.0 388,923 + MPMX19_04086 0.19 +0.6 388,923 + MPMX19_04086 0.19 +0.2 388,923 + MPMX19_04086 0.19 -1.3 388,923 + MPMX19_04086 0.19 -0.3 388,923 + MPMX19_04086 0.19 +0.2 388,923 + MPMX19_04086 0.19 +0.3 388,923 + MPMX19_04086 0.19 -1.0 388,923 + MPMX19_04086 0.19 -0.7 388,923 + MPMX19_04086 0.19 +0.9 388,923 + MPMX19_04086 0.19 -0.5 388,923 + MPMX19_04086 0.19 -0.2 388,923 + MPMX19_04086 0.19 -0.9 388,923 + MPMX19_04086 0.19 -0.7 388,923 + MPMX19_04086 0.19 -0.6 388,923 + MPMX19_04086 0.19 +0.4 388,923 + MPMX19_04086 0.19 -0.9 388,924 - MPMX19_04086 0.19 +0.6 388,924 - MPMX19_04086 0.19 -1.7 388,924 - MPMX19_04086 0.19 +0.5 388,924 - MPMX19_04086 0.19 -0.7 388,924 - MPMX19_04086 0.19 +0.6 388,924 - MPMX19_04086 0.19 -2.0 388,924 - MPMX19_04086 0.19 +0.2 388,924 - MPMX19_04086 0.19 +0.4 388,924 - MPMX19_04086 0.19 +0.5 388,924 - MPMX19_04086 0.19 -1.0 388,924 - MPMX19_04086 0.19 -0.6 388,924 - MPMX19_04086 0.19 -1.4 388,924 - MPMX19_04086 0.19 -0.3 388,924 - MPMX19_04086 0.19 -0.1 388,924 - MPMX19_04086 0.19 -1.3
Or see this region's nucleotide sequence