Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04032

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04031 and MPMX19_04032 are separated by 143 nucleotidesMPMX19_04032 and MPMX19_04033 are separated by 460 nucleotides MPMX19_04031: MPMX19_04031 - hypothetical protein, at 327,351 to 329,189 _04031 MPMX19_04032: MPMX19_04032 - hypothetical protein, at 329,333 to 329,869 _04032 MPMX19_04033: MPMX19_04033 - Colistin resistance protein EmrA, at 330,330 to 331,472 _04033 Position (kb) 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.444 kb on + strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.445 kb on - strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.546 kb on + strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.547 kb on - strand, within MPMX19_04031at 328.672 kb on + strand, within MPMX19_04031at 328.673 kb on - strand, within MPMX19_04031at 328.698 kb on - strand, within MPMX19_04031at 328.698 kb on - strand, within MPMX19_04031at 328.834 kb on + strand, within MPMX19_04031at 328.834 kb on + strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 328.835 kb on - strand, within MPMX19_04031at 329.113 kb on + strandat 329.113 kb on + strandat 329.113 kb on + strandat 329.113 kb on + strandat 329.114 kb on - strandat 329.114 kb on - strandat 329.114 kb on - strandat 329.225 kb on - strandat 329.225 kb on - strandat 329.225 kb on - strandat 329.334 kb on + strandat 329.334 kb on + strandat 329.334 kb on + strandat 329.334 kb on + strandat 329.481 kb on + strand, within MPMX19_04032at 329.481 kb on + strand, within MPMX19_04032at 329.482 kb on - strand, within MPMX19_04032at 329.482 kb on - strand, within MPMX19_04032at 329.482 kb on - strand, within MPMX19_04032at 329.482 kb on - strand, within MPMX19_04032at 329.482 kb on - strand, within MPMX19_04032at 329.482 kb on - strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.493 kb on + strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.494 kb on - strand, within MPMX19_04032at 329.940 kb on + strandat 329.956 kb on + strandat 329.956 kb on + strandat 329.957 kb on - strandat 329.957 kb on - strandat 329.957 kb on - strandat 329.957 kb on - strandat 329.957 kb on - strandat 329.957 kb on - strandat 329.960 kb on + strandat 329.960 kb on + strandat 330.000 kb on + strandat 330.000 kb on + strandat 330.037 kb on - strandat 330.054 kb on - strandat 330.069 kb on + strandat 330.069 kb on + strandat 330.069 kb on + strandat 330.070 kb on - strandat 330.079 kb on + strandat 330.080 kb on - strandat 330.325 kb on + strandat 330.325 kb on + strandat 330.325 kb on + strandat 330.325 kb on + strandat 330.325 kb on + strandat 330.326 kb on - strandat 330.326 kb on - strandat 330.519 kb on + strand, within MPMX19_04033at 330.519 kb on + strand, within MPMX19_04033at 330.519 kb on + strand, within MPMX19_04033at 330.520 kb on - strand, within MPMX19_04033at 330.520 kb on - strand, within MPMX19_04033at 330.520 kb on - strand, within MPMX19_04033at 330.525 kb on + strand, within MPMX19_04033at 330.525 kb on + strand, within MPMX19_04033at 330.525 kb on + strand, within MPMX19_04033at 330.525 kb on + strand, within MPMX19_04033at 330.525 kb on + strand, within MPMX19_04033at 330.525 kb on + strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.526 kb on - strand, within MPMX19_04033at 330.549 kb on + strand, within MPMX19_04033at 330.549 kb on + strand, within MPMX19_04033at 330.615 kb on + strand, within MPMX19_04033at 330.615 kb on + strand, within MPMX19_04033at 330.615 kb on + strand, within MPMX19_04033at 330.615 kb on + strand, within MPMX19_04033at 330.616 kb on - strand, within MPMX19_04033at 330.616 kb on - strand, within MPMX19_04033at 330.616 kb on - strand, within MPMX19_04033at 330.616 kb on - strand, within MPMX19_04033at 330.757 kb on - strand, within MPMX19_04033at 330.757 kb on - strand, within MPMX19_04033at 330.757 kb on - strand, within MPMX19_04033at 330.757 kb on - strand, within MPMX19_04033at 330.757 kb on - strand, within MPMX19_04033

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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328,444 + MPMX19_04031 0.59 -0.7
328,444 + MPMX19_04031 0.59 -0.2
328,444 + MPMX19_04031 0.59 -1.7
328,444 + MPMX19_04031 0.59 -0.2
328,444 + MPMX19_04031 0.59 +0.0
328,444 + MPMX19_04031 0.59 -1.6
328,444 + MPMX19_04031 0.59 -2.1
328,444 + MPMX19_04031 0.59 -0.8
328,444 + MPMX19_04031 0.59 +0.4
328,445 - MPMX19_04031 0.59 +0.6
328,445 - MPMX19_04031 0.59 +0.2
328,445 - MPMX19_04031 0.59 +0.1
328,445 - MPMX19_04031 0.59 +0.3
328,445 - MPMX19_04031 0.59 +0.4
328,445 - MPMX19_04031 0.59 +0.3
328,445 - MPMX19_04031 0.59 -1.7
328,546 + MPMX19_04031 0.65 +0.6
328,546 + MPMX19_04031 0.65 -1.6
328,546 + MPMX19_04031 0.65 +0.0
328,546 + MPMX19_04031 0.65 +0.7
328,546 + MPMX19_04031 0.65 -0.2
328,546 + MPMX19_04031 0.65 -0.5
328,546 + MPMX19_04031 0.65 -0.1
328,546 + MPMX19_04031 0.65 -0.3
328,546 + MPMX19_04031 0.65 +1.0
328,546 + MPMX19_04031 0.65 -1.2
328,546 + MPMX19_04031 0.65 -0.4
328,547 - MPMX19_04031 0.65 -0.2
328,547 - MPMX19_04031 0.65 -0.7
328,547 - MPMX19_04031 0.65 +1.2
328,547 - MPMX19_04031 0.65 +0.3
328,547 - MPMX19_04031 0.65 +0.4
328,547 - MPMX19_04031 0.65 +0.5
328,547 - MPMX19_04031 0.65 -0.8
328,547 - MPMX19_04031 0.65 +0.5
328,547 - MPMX19_04031 0.65 -0.7
328,547 - MPMX19_04031 0.65 +0.4
328,547 - MPMX19_04031 0.65 -2.2
328,547 - MPMX19_04031 0.65 -1.8
328,547 - MPMX19_04031 0.65 -0.1
328,672 + MPMX19_04031 0.72 -1.6
328,673 - MPMX19_04031 0.72 +1.4
328,698 - MPMX19_04031 0.73 -1.1
328,698 - MPMX19_04031 0.73 -0.7
328,834 + MPMX19_04031 0.81 -1.4
328,834 + MPMX19_04031 0.81 -1.2
328,835 - MPMX19_04031 0.81 -0.7
328,835 - MPMX19_04031 0.81 -0.2
328,835 - MPMX19_04031 0.81 -1.4
328,835 - MPMX19_04031 0.81 +1.0
328,835 - MPMX19_04031 0.81 +0.1
328,835 - MPMX19_04031 0.81 +0.6
328,835 - MPMX19_04031 0.81 -0.3
328,835 - MPMX19_04031 0.81 -1.3
328,835 - MPMX19_04031 0.81 +0.3
329,113 + -0.2
329,113 + +0.6
329,113 + +0.0
329,113 + +1.1
329,114 - -2.5
329,114 - -0.6
329,114 - +0.6
329,225 - -0.5
329,225 - -0.9
329,225 - -0.3
329,334 + -1.6
329,334 + -0.1
329,334 + -1.1
329,334 + -1.6
329,481 + MPMX19_04032 0.28 +0.4
329,481 + MPMX19_04032 0.28 +0.6
329,482 - MPMX19_04032 0.28 +0.3
329,482 - MPMX19_04032 0.28 +1.1
329,482 - MPMX19_04032 0.28 +0.8
329,482 - MPMX19_04032 0.28 +0.2
329,482 - MPMX19_04032 0.28 -1.1
329,482 - MPMX19_04032 0.28 -1.2
329,493 + MPMX19_04032 0.30 -0.1
329,493 + MPMX19_04032 0.30 +0.0
329,493 + MPMX19_04032 0.30 +0.3
329,493 + MPMX19_04032 0.30 +0.9
329,493 + MPMX19_04032 0.30 +0.4
329,493 + MPMX19_04032 0.30 +0.4
329,493 + MPMX19_04032 0.30 -0.4
329,493 + MPMX19_04032 0.30 -0.1
329,493 + MPMX19_04032 0.30 +0.8
329,493 + MPMX19_04032 0.30 -0.6
329,493 + MPMX19_04032 0.30 -0.1
329,493 + MPMX19_04032 0.30 +0.9
329,493 + MPMX19_04032 0.30 -0.3
329,493 + MPMX19_04032 0.30 -0.7
329,493 + MPMX19_04032 0.30 +0.0
329,493 + MPMX19_04032 0.30 -0.7
329,494 - MPMX19_04032 0.30 -0.2
329,494 - MPMX19_04032 0.30 -0.1
329,494 - MPMX19_04032 0.30 +0.3
329,494 - MPMX19_04032 0.30 +0.5
329,494 - MPMX19_04032 0.30 +0.8
329,494 - MPMX19_04032 0.30 -0.8
329,494 - MPMX19_04032 0.30 -0.7
329,494 - MPMX19_04032 0.30 +0.4
329,494 - MPMX19_04032 0.30 +1.0
329,494 - MPMX19_04032 0.30 -1.8
329,494 - MPMX19_04032 0.30 +0.7
329,494 - MPMX19_04032 0.30 +0.2
329,494 - MPMX19_04032 0.30 -0.2
329,494 - MPMX19_04032 0.30 +0.1
329,494 - MPMX19_04032 0.30 -0.6
329,494 - MPMX19_04032 0.30 +1.1
329,940 + -1.1
329,956 + -0.9
329,956 + -0.4
329,957 - -0.9
329,957 - -0.2
329,957 - -0.2
329,957 - -1.2
329,957 - +0.4
329,957 - -0.8
329,960 + -0.6
329,960 + +0.4
330,000 + +1.3
330,000 + +1.2
330,037 - +0.7
330,054 - -0.1
330,069 + +0.5
330,069 + +1.9
330,069 + -0.7
330,070 - +1.1
330,079 + -1.6
330,080 - -0.1
330,325 + -1.5
330,325 + -0.3
330,325 + +0.3
330,325 + -1.1
330,325 + +0.1
330,326 - -1.7
330,326 - +0.9
330,519 + MPMX19_04033 0.17 -0.0
330,519 + MPMX19_04033 0.17 -0.8
330,519 + MPMX19_04033 0.17 -1.2
330,520 - MPMX19_04033 0.17 +0.9
330,520 - MPMX19_04033 0.17 +1.4
330,520 - MPMX19_04033 0.17 -0.4
330,525 + MPMX19_04033 0.17 +0.6
330,525 + MPMX19_04033 0.17 -1.0
330,525 + MPMX19_04033 0.17 +0.3
330,525 + MPMX19_04033 0.17 +1.2
330,525 + MPMX19_04033 0.17 -0.4
330,525 + MPMX19_04033 0.17 -0.4
330,526 - MPMX19_04033 0.17 +0.1
330,526 - MPMX19_04033 0.17 +1.4
330,526 - MPMX19_04033 0.17 +0.2
330,526 - MPMX19_04033 0.17 -1.7
330,526 - MPMX19_04033 0.17 -0.4
330,526 - MPMX19_04033 0.17 +0.3
330,526 - MPMX19_04033 0.17 -0.4
330,526 - MPMX19_04033 0.17 +0.4
330,526 - MPMX19_04033 0.17 -2.0
330,549 + MPMX19_04033 0.19 -0.0
330,549 + MPMX19_04033 0.19 -1.2
330,615 + MPMX19_04033 0.25 +0.2
330,615 + MPMX19_04033 0.25 +0.6
330,615 + MPMX19_04033 0.25 +1.3
330,615 + MPMX19_04033 0.25 +0.2
330,616 - MPMX19_04033 0.25 +0.1
330,616 - MPMX19_04033 0.25 -0.5
330,616 - MPMX19_04033 0.25 +0.5
330,616 - MPMX19_04033 0.25 +0.3
330,757 - MPMX19_04033 0.37 -0.8
330,757 - MPMX19_04033 0.37 +0.4
330,757 - MPMX19_04033 0.37 -0.7
330,757 - MPMX19_04033 0.37 -1.0
330,757 - MPMX19_04033 0.37 -0.2

Or see this region's nucleotide sequence