Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02858

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02857 and MPMX19_02858 are separated by 107 nucleotidesMPMX19_02858 and MPMX19_02859 are separated by 229 nucleotides MPMX19_02857: MPMX19_02857 - HTH-type transcriptional regulator PgrR, at 101,283 to 102,245 _02857 MPMX19_02858: MPMX19_02858 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 102,353 to 103,183 _02858 MPMX19_02859: MPMX19_02859 - L-asparaginase 2, at 103,413 to 104,522 _02859 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1at 101.477 kb on + strand, within MPMX19_02857at 101.477 kb on + strand, within MPMX19_02857at 101.477 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.785 kb on - strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.971 kb on + strand, within MPMX19_02857at 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.276 kb on + strandat 102.276 kb on + strandat 102.276 kb on + strandat 102.277 kb on - strandat 102.307 kb on + strandat 102.308 kb on - strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.325 kb on + strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.326 kb on - strandat 102.596 kb on + strand, within MPMX19_02858at 102.727 kb on + strand, within MPMX19_02858at 102.728 kb on - strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.782 kb on + strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.783 kb on - strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.941 kb on + strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 102.942 kb on - strand, within MPMX19_02858at 103.325 kb on + strandat 103.386 kb on + strandat 103.387 kb on - strandat 103.608 kb on + strand, within MPMX19_02859at 103.609 kb on - strand, within MPMX19_02859at 103.831 kb on - strand, within MPMX19_02859at 103.831 kb on - strand, within MPMX19_02859at 103.929 kb on + strand, within MPMX19_02859at 103.929 kb on + strand, within MPMX19_02859at 103.930 kb on - strand, within MPMX19_02859at 103.930 kb on - strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.082 kb on + strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.083 kb on - strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.084 kb on + strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.085 kb on - strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.109 kb on + strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859at 104.110 kb on - strand, within MPMX19_02859

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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101,477 + MPMX19_02857 0.20 -0.4
101,477 + MPMX19_02857 0.20 +0.6
101,477 + MPMX19_02857 0.20 -0.4
101,623 + MPMX19_02857 0.35 -1.8
101,623 + MPMX19_02857 0.35 -0.1
101,623 + MPMX19_02857 0.35 +0.1
101,623 + MPMX19_02857 0.35 +1.2
101,623 + MPMX19_02857 0.35 +1.0
101,623 + MPMX19_02857 0.35 +1.6
101,623 + MPMX19_02857 0.35 -1.4
101,623 + MPMX19_02857 0.35 +0.2
101,623 + MPMX19_02857 0.35 -1.2
101,623 + MPMX19_02857 0.35 -0.4
101,624 - MPMX19_02857 0.35 -1.1
101,624 - MPMX19_02857 0.35 -1.8
101,624 - MPMX19_02857 0.35 -0.0
101,624 - MPMX19_02857 0.35 -0.3
101,624 - MPMX19_02857 0.35 -0.4
101,624 - MPMX19_02857 0.35 -1.6
101,624 - MPMX19_02857 0.35 -0.2
101,624 - MPMX19_02857 0.35 +0.9
101,784 + MPMX19_02857 0.52 -0.8
101,784 + MPMX19_02857 0.52 +1.2
101,784 + MPMX19_02857 0.52 +0.9
101,785 - MPMX19_02857 0.52 +0.8
101,911 + MPMX19_02857 0.65 +0.4
101,911 + MPMX19_02857 0.65 +0.3
101,911 + MPMX19_02857 0.65 -0.2
101,911 + MPMX19_02857 0.65 -0.0
101,911 + MPMX19_02857 0.65 +0.3
101,911 + MPMX19_02857 0.65 +0.6
101,912 - MPMX19_02857 0.65 -1.0
101,912 - MPMX19_02857 0.65 -0.2
101,912 - MPMX19_02857 0.65 -1.3
101,912 - MPMX19_02857 0.65 -0.3
101,912 - MPMX19_02857 0.65 -1.8
101,912 - MPMX19_02857 0.65 -1.1
101,912 - MPMX19_02857 0.65 +0.2
101,936 + MPMX19_02857 0.68 -0.0
101,936 + MPMX19_02857 0.68 +0.2
101,936 + MPMX19_02857 0.68 +0.2
101,937 - MPMX19_02857 0.68 -0.9
101,937 - MPMX19_02857 0.68 -0.8
101,937 - MPMX19_02857 0.68 +0.9
101,937 - MPMX19_02857 0.68 -0.2
101,937 - MPMX19_02857 0.68 +0.2
101,937 - MPMX19_02857 0.68 -0.8
101,971 + MPMX19_02857 0.71 +0.1
102,217 + -0.6
102,217 + +0.0
102,217 + +0.6
102,217 + -0.4
102,217 + -1.5
102,217 + +0.7
102,218 - +0.1
102,218 - -1.0
102,218 - -0.8
102,218 - -0.0
102,218 - +0.1
102,276 + +1.0
102,276 + +0.3
102,276 + -1.0
102,277 - -0.8
102,307 + -2.0
102,308 - +0.2
102,325 + -0.3
102,325 + -1.8
102,325 + +0.3
102,325 + -0.3
102,325 + -0.2
102,325 + -0.4
102,325 + -1.4
102,325 + +0.3
102,325 + -1.1
102,325 + +0.4
102,325 + -1.3
102,325 + -0.8
102,325 + +0.0
102,325 + -1.9
102,326 - -0.3
102,326 - +0.4
102,326 - +0.6
102,326 - +0.1
102,326 - +0.2
102,326 - +0.6
102,326 - -0.5
102,326 - -0.8
102,596 + MPMX19_02858 0.29 -2.1
102,727 + MPMX19_02858 0.45 -1.0
102,728 - MPMX19_02858 0.45 +0.5
102,782 + MPMX19_02858 0.52 -1.2
102,782 + MPMX19_02858 0.52 +0.8
102,782 + MPMX19_02858 0.52 +0.8
102,782 + MPMX19_02858 0.52 +1.0
102,783 - MPMX19_02858 0.52 +0.7
102,783 - MPMX19_02858 0.52 +0.7
102,783 - MPMX19_02858 0.52 -0.1
102,783 - MPMX19_02858 0.52 +1.1
102,783 - MPMX19_02858 0.52 -0.0
102,783 - MPMX19_02858 0.52 +0.6
102,941 + MPMX19_02858 0.71 +1.5
102,941 + MPMX19_02858 0.71 -0.0
102,941 + MPMX19_02858 0.71 -1.3
102,941 + MPMX19_02858 0.71 +0.1
102,941 + MPMX19_02858 0.71 +0.6
102,941 + MPMX19_02858 0.71 -0.2
102,942 - MPMX19_02858 0.71 +0.4
102,942 - MPMX19_02858 0.71 -0.8
102,942 - MPMX19_02858 0.71 -1.8
102,942 - MPMX19_02858 0.71 -0.6
103,325 + +0.6
103,386 + +0.6
103,387 - -0.3
103,608 + MPMX19_02859 0.18 +1.1
103,609 - MPMX19_02859 0.18 -0.8
103,831 - MPMX19_02859 0.38 -1.1
103,831 - MPMX19_02859 0.38 +0.2
103,929 + MPMX19_02859 0.46 +0.8
103,929 + MPMX19_02859 0.46 -0.0
103,930 - MPMX19_02859 0.47 -1.1
103,930 - MPMX19_02859 0.47 -0.0
104,082 + MPMX19_02859 0.60 -0.2
104,082 + MPMX19_02859 0.60 -0.2
104,082 + MPMX19_02859 0.60 -0.0
104,082 + MPMX19_02859 0.60 +0.6
104,082 + MPMX19_02859 0.60 +0.2
104,082 + MPMX19_02859 0.60 -0.1
104,082 + MPMX19_02859 0.60 -0.3
104,082 + MPMX19_02859 0.60 +0.1
104,082 + MPMX19_02859 0.60 -1.3
104,083 - MPMX19_02859 0.60 -1.0
104,083 - MPMX19_02859 0.60 -0.2
104,083 - MPMX19_02859 0.60 -1.6
104,083 - MPMX19_02859 0.60 -0.1
104,083 - MPMX19_02859 0.60 -0.2
104,084 + MPMX19_02859 0.60 +1.6
104,084 + MPMX19_02859 0.60 -0.5
104,084 + MPMX19_02859 0.60 -0.4
104,084 + MPMX19_02859 0.60 -1.0
104,084 + MPMX19_02859 0.60 +0.2
104,084 + MPMX19_02859 0.60 -0.8
104,084 + MPMX19_02859 0.60 -0.2
104,084 + MPMX19_02859 0.60 -0.5
104,084 + MPMX19_02859 0.60 +0.0
104,085 - MPMX19_02859 0.61 -1.0
104,085 - MPMX19_02859 0.61 -0.9
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 -0.9
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 +0.7
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 +0.0
104,085 - MPMX19_02859 0.61 +1.3
104,085 - MPMX19_02859 0.61 +1.2
104,085 - MPMX19_02859 0.61 -0.9
104,085 - MPMX19_02859 0.61 -0.3
104,085 - MPMX19_02859 0.61 +0.2
104,085 - MPMX19_02859 0.61 +1.0
104,085 - MPMX19_02859 0.61 -0.8
104,085 - MPMX19_02859 0.61 -0.2
104,085 - MPMX19_02859 0.61 -0.4
104,109 + MPMX19_02859 0.63 -0.7
104,109 + MPMX19_02859 0.63 -1.0
104,109 + MPMX19_02859 0.63 -1.2
104,109 + MPMX19_02859 0.63 -1.5
104,109 + MPMX19_02859 0.63 +0.3
104,109 + MPMX19_02859 0.63 -1.8
104,109 + MPMX19_02859 0.63 +0.6
104,110 - MPMX19_02859 0.63 +0.1
104,110 - MPMX19_02859 0.63 +0.2
104,110 - MPMX19_02859 0.63 -1.4
104,110 - MPMX19_02859 0.63 -0.0
104,110 - MPMX19_02859 0.63 +0.0

Or see this region's nucleotide sequence