Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02800 and MPMX19_02801 overlap by 4 nucleotides MPMX19_02801 and MPMX19_02802 overlap by 8 nucleotides MPMX19_02802 and MPMX19_02803 are separated by 5 nucleotides
MPMX19_02800: MPMX19_02800 - hypothetical protein, at 34,837 to 35,853
_02800
MPMX19_02801: MPMX19_02801 - Lipopolysaccharide export system ATP-binding protein LptB, at 35,850 to 36,641
_02801
MPMX19_02802: MPMX19_02802 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 36,634 to 37,341
_02802
MPMX19_02803: MPMX19_02803 - putative FAD-linked oxidoreductase, at 37,347 to 38,789
_02803
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.653 kb on + strand, within MPMX19_02800 at 35.653 kb on + strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.655 kb on + strand, within MPMX19_02800 at 35.656 kb on - strand, within MPMX19_02800 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.613 kb on - strand at 36.613 kb on - strand at 36.613 kb on - strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.640 kb on - strand at 36.640 kb on - strand at 36.831 kb on + strand, within MPMX19_02802 at 36.832 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.328 kb on - strand at 37.328 kb on - strand at 37.328 kb on - strand at 37.920 kb on + strand, within MPMX19_02803 at 37.920 kb on + strand, within MPMX19_02803 at 38.190 kb on + strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 35,653 + MPMX19_02800 0.80 +1.3 35,653 + MPMX19_02800 0.80 +0.8 35,654 - MPMX19_02800 0.80 +0.8 35,654 - MPMX19_02800 0.80 -2.4 35,654 - MPMX19_02800 0.80 -0.1 35,654 - MPMX19_02800 0.80 +0.9 35,654 - MPMX19_02800 0.80 -0.3 35,654 - MPMX19_02800 0.80 -1.4 35,654 - MPMX19_02800 0.80 -2.1 35,655 + MPMX19_02800 0.80 +0.6 35,656 - MPMX19_02800 0.81 -0.8 36,331 - MPMX19_02801 0.61 -0.2 36,331 - MPMX19_02801 0.61 +0.2 36,331 - MPMX19_02801 0.61 -1.8 36,331 - MPMX19_02801 0.61 -0.4 36,331 - MPMX19_02801 0.61 +1.2 36,612 + -1.1 36,612 + +0.2 36,612 + -2.8 36,612 + -1.3 36,612 + +0.1 36,613 - -1.0 36,613 - -0.4 36,613 - -0.4 36,639 + +1.6 36,639 + -0.4 36,639 + +0.2 36,639 + +0.6 36,640 - -1.5 36,640 - +1.1 36,831 + MPMX19_02802 0.28 -0.8 36,832 - MPMX19_02802 0.28 +0.1 36,989 - MPMX19_02802 0.50 -0.7 36,989 - MPMX19_02802 0.50 +0.8 36,989 - MPMX19_02802 0.50 -1.3 37,249 + MPMX19_02802 0.87 +1.0 37,249 + MPMX19_02802 0.87 +0.7 37,249 + MPMX19_02802 0.87 +0.8 37,249 + MPMX19_02802 0.87 -0.3 37,249 + MPMX19_02802 0.87 -1.4 37,249 + MPMX19_02802 0.87 +0.2 37,249 + MPMX19_02802 0.87 -0.8 37,249 + MPMX19_02802 0.87 -1.1 37,249 + MPMX19_02802 0.87 +1.6 37,250 - MPMX19_02802 0.87 +0.3 37,250 - MPMX19_02802 0.87 -0.4 37,250 - MPMX19_02802 0.87 -0.0 37,250 - MPMX19_02802 0.87 +1.1 37,250 - MPMX19_02802 0.87 -0.0 37,250 - MPMX19_02802 0.87 -0.5 37,250 - MPMX19_02802 0.87 -3.1 37,250 - MPMX19_02802 0.87 -0.1 37,250 - MPMX19_02802 0.87 -0.9 37,250 - MPMX19_02802 0.87 -0.3 37,250 - MPMX19_02802 0.87 -1.2 37,327 + -0.2 37,327 + -1.4 37,327 + -0.0 37,327 + -1.9 37,327 + -0.1 37,327 + +0.2 37,328 - +1.4 37,328 - +0.1 37,328 - +0.7 37,920 + MPMX19_02803 0.40 -0.2 37,920 + MPMX19_02803 0.40 -0.1 38,190 + MPMX19_02803 0.58 +0.7 38,191 - MPMX19_02803 0.58 -0.6 38,191 - MPMX19_02803 0.58 -1.4 38,191 - MPMX19_02803 0.58 +0.1
Or see this region's nucleotide sequence