Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01882

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
1,961,624	+		MPMX19_01881	0.54	+2.0
1,961,624	+		MPMX19_01881	0.54	-0.3
1,961,624	+		MPMX19_01881	0.54	-0.6
1,961,625	-		MPMX19_01881	0.54	+0.4
1,961,625	-		MPMX19_01881	0.54	-1.0
1,961,625	-		MPMX19_01881	0.54	+0.3
1,961,625	-		MPMX19_01881	0.54	+0.7
1,961,780	+		MPMX19_01881	0.67	+0.2
1,961,780	+		MPMX19_01881	0.67	+0.4
1,961,780	+		MPMX19_01881	0.67	+1.5
1,961,781	-		MPMX19_01881	0.67	-0.2
1,961,781	-		MPMX19_01881	0.67	+0.3
1,961,781	-		MPMX19_01881	0.67	-0.8
1,961,781	-		MPMX19_01881	0.67	-0.0
1,961,809	+		MPMX19_01881	0.69	-1.0
1,961,809	+		MPMX19_01881	0.69	+0.8
1,961,810	-		MPMX19_01881	0.69	+0.4
1,961,810	-		MPMX19_01881	0.69	-0.3
1,961,957	+		MPMX19_01881	0.81	+0.5
1,961,957	+		MPMX19_01881	0.81	-1.0
1,961,957	+		MPMX19_01881	0.81	+0.3
1,961,957	+		MPMX19_01881	0.81	-0.5
1,961,958	-		MPMX19_01881	0.81	+0.8
1,961,958	-		MPMX19_01881	0.81	-0.3
1,961,958	-		MPMX19_01881	0.81	-0.9
1,961,975	+		MPMX19_01881	0.83	+0.9
1,961,975	+		MPMX19_01881	0.83	-1.7
1,961,975	+		MPMX19_01881	0.83	+0.6
1,961,975	+		MPMX19_01881	0.83	-1.1
1,961,976	-		MPMX19_01881	0.83	+0.7
1,961,976	-		MPMX19_01881	0.83	-1.0
1,961,976	-		MPMX19_01881	0.83	-1.1
1,962,152	+				-1.6
1,962,152	+				+0.6
1,962,152	+				-0.9
1,962,152	+				-1.7
1,962,152	+				+0.5
1,962,152	+				+0.1
1,962,152	+				-0.2
1,962,152	+				+1.4
1,962,152	+				+0.7
1,962,152	+				-0.2
1,962,152	+				+2.2
1,962,152	+				-0.5
1,962,152	+				+0.5
1,962,152	+				-0.0
1,962,152	+				+0.5
1,962,152	+				+0.1
1,962,153	-				+0.8
1,962,153	-				-0.1
1,962,153	-				-0.5
1,962,153	-				-1.9
1,962,153	-				-0.8
1,962,189	+				+1.5
1,962,189	+				-0.6
1,962,189	+				+0.9
1,962,189	+				+2.0
1,962,189	+				-3.0
1,962,189	+				-0.8
1,962,189	+				+0.3
1,962,189	+				-1.8
1,962,189	+				+1.0
1,962,189	+				-1.9
1,962,190	-				-2.2
1,962,190	-				-1.0
1,962,190	-				+0.1
1,962,190	-				-0.7
1,962,190	-				+0.1
1,962,190	-				-0.5
1,962,190	-				-0.5
1,962,190	-				-0.7
1,962,190	-				-1.3
1,962,190	-				-1.1
1,962,429	+		MPMX19_01882	0.26	-0.5
1,962,429	+		MPMX19_01882	0.26	-0.8
1,962,429	+		MPMX19_01882	0.26	+0.2
1,962,429	+		MPMX19_01882	0.26	-0.2
1,962,429	+		MPMX19_01882	0.26	-1.3
1,962,430	+		MPMX19_01882	0.26	+0.8
1,962,430	-		MPMX19_01882	0.26	-1.8
1,962,430	-		MPMX19_01882	0.26	+0.2
1,962,430	-		MPMX19_01882	0.26	-1.3
1,962,430	-		MPMX19_01882	0.26	-1.4
1,962,430	-		MPMX19_01882	0.26	-0.0
1,962,430	-		MPMX19_01882	0.26	-0.6
1,962,430	-		MPMX19_01882	0.26	-1.0
1,962,430	-		MPMX19_01882	0.26	+0.8
1,962,430	-		MPMX19_01882	0.26	-0.2
1,962,441	+		MPMX19_01882	0.28	-0.2
1,962,441	+		MPMX19_01882	0.28	+0.3
1,962,441	+		MPMX19_01882	0.28	-1.5
1,962,441	+		MPMX19_01882	0.28	-0.5
1,962,441	+		MPMX19_01882	0.28	+0.2
1,962,442	-		MPMX19_01882	0.28	-1.8
1,962,442	-		MPMX19_01882	0.28	-0.8
1,962,442	-		MPMX19_01882	0.28	-1.2
1,962,522	+		MPMX19_01882	0.38	+0.8
1,962,522	+		MPMX19_01882	0.38	-0.1
1,962,522	+		MPMX19_01882	0.38	-1.8
1,962,522	+		MPMX19_01882	0.38	-1.2
1,962,522	+		MPMX19_01882	0.38	-1.8
1,962,522	+		MPMX19_01882	0.38	+0.5
1,962,522	+		MPMX19_01882	0.38	-0.5
1,962,522	+		MPMX19_01882	0.38	-1.8
1,962,522	+		MPMX19_01882	0.38	-0.3
1,962,523	-		MPMX19_01882	0.38	-1.5
1,962,523	-		MPMX19_01882	0.38	-0.0
1,962,523	-		MPMX19_01882	0.38	-0.5
1,962,523	-		MPMX19_01882	0.38	+0.1
1,962,523	-		MPMX19_01882	0.38	+1.0
1,962,544	-		MPMX19_01882	0.40	+0.1
1,962,544	-		MPMX19_01882	0.40	+0.5
1,962,783	+		MPMX19_01882	0.69	-1.2
1,962,783	+		MPMX19_01882	0.69	+1.2
1,962,783	+		MPMX19_01882	0.69	+0.2
1,962,783	+		MPMX19_01882	0.69	-0.0
1,962,783	+		MPMX19_01882	0.69	-0.5
1,962,784	-		MPMX19_01882	0.69	+0.7
1,962,784	-		MPMX19_01882	0.69	+0.7
1,963,059	+				-0.3
1,963,059	+				-1.4
1,963,059	+				-0.6
1,963,059	+				-0.2
1,963,059	+				+0.2
1,963,059	+				-0.9
1,963,059	+				-1.0
1,963,059	+				+0.2
1,963,059	+				-2.5
1,963,059	+				+0.1
1,963,059	+				-1.6
1,963,059	+				-1.5
1,963,059	+				-0.3
1,963,059	+				-0.8
1,963,060	-				+0.1
1,963,060	-				-0.5
1,963,060	-				+0.3
1,963,060	-				-1.1
1,963,060	-				-1.5
1,963,060	-				-0.9
1,963,060	-				-0.8
1,963,060	-				-2.0
1,963,060	-				+0.5
1,963,060	-				-0.4
1,963,060	-				-0.7
1,963,060	-				-0.4
1,963,060	-				-0.1
1,963,060	-				+0.3
1,963,092	-				-0.0
1,963,092	-				-1.9
1,963,092	-				+0.5
1,963,111	+				-2.5
1,963,111	+				-0.9
1,963,111	+				-1.5
1,963,111	+				-0.3
1,963,111	+				+0.2
1,963,112	-				+0.5
1,963,112	-				-0.8
1,963,112	-				-0.7
1,963,112	-				+0.4
1,963,112	-				-0.4
1,963,112	-				-1.3
1,963,112	-				+0.1
1,963,112	-				-0.3
1,963,112	-				-0.1
1,963,239	+				-0.8
1,963,239	+				-1.4
1,963,240	-				-0.5
1,963,240	-				-0.7
1,963,255	+				-0.3
1,963,255	+				-0.8
1,963,255	+				+1.9
1,963,255	+				+0.4
1,963,255	+				-0.0
1,963,256	-				-0.0
1,963,256	-				-1.5
1,963,256	-				-1.9
1,963,273	+				+0.0
1,963,273	+				-1.9
1,963,273	+				-1.5
1,963,273	+				-0.8
1,963,273	+				-0.8
1,963,273	+				+1.0
1,963,273	+				-0.8
1,963,273	+				-0.3
1,963,273	+				-0.8
1,963,273	+				-3.4
1,963,273	+				-0.7
1,963,273	+				-0.9
1,963,273	+				-0.0
1,963,273	+				-1.9
1,963,274	-				-0.6
1,963,274	-				+0.1
1,963,274	-				+0.2
1,963,274	-				+1.3
1,963,274	-				-1.3
1,963,274	-				+0.1
1,963,274	-				-0.0
1,963,274	-				-0.8
1,963,274	-				-0.9
1,963,274	-				-1.6
1,963,274	-				-1.7
1,963,274	-				-1.2
1,963,274	-				-2.3
1,963,274	-				-1.9
1,963,274	-				-2.8
1,963,274	-				-0.0
1,963,274	-				+0.1
1,963,274	-				-1.1
1,963,274	-				-0.2
1,963,274	-				-0.8
1,963,274	-				+0.1
1,963,274	-				-1.9
1,963,507	+		MPMX19_01883	0.11	-2.2
1,963,855	+		MPMX19_01883	0.27	-0.7
1,963,856	-		MPMX19_01883	0.27	-2.2